Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00113 ATGGCTGAAAAAGATGATGGGTTGGGCTTGGGGTTGAGTTTGAGATGGGGAGAGAATGACGATAATAACATGAATGAACAACAACAACACCCTTTCAACATGCACAAACCTCCTCAACCTGTTCCAAACCAAAGGGCTTCTTCTTTCAATAATTTGTTCCATCTCCATGGTGCGTCTCATGTTACCAATCGGAGCTCCGAACCTCCACCGTTCTTCTTTGGAATAGATGTGAACTTGCCGCCGCCACCACCACCATCGGCACCATGCTACGAGGAAAACGGTGTGTCTTCACCGAACAGCGCAGTTTCAAGCATCAGCGGGAAGAGGAGCGAAAGAGAGGAGAATGAGAGAGGGTCATGTTCTCGAGGTGGAAGTGAAGATGATGATGGCGGAGGGTGTGGTGGTGATGGCGACGGGGACGGCGACACGTCGAGGAAGAAACTGAGGTTGTCAAAAGAACAGGCCTTGGTGCTTGAAGAAACTTTCAAGGAACACAACACTCTGAATCCGAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGTCCTAGGCAGGTTGAAGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTATGAGAATCTAACTGAGGACAATAGGAGGCTGCAGAAGGAAGTGCAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACATGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCATGTGAGCGTGTTGCTGTCTCATCTGCATCATCTTCATCGGCCTCCTTGCCTTCTGTGCCGCCGCCTCCGGCCAATCACAACCCATTAGGCCCTACCATCCGGCGGCCGGTGCCTGTCAACCCTTGGGCAGCAATGTCAATTCAGCGCCGTCCCCCGCCGTAG 927 0.5049 MAEKDDGLGLGLSLRWGENDDNNMNEQQQHPFNMHKPPQPVPNQRASSFNNLFHLHGASHVTNRSSEPPPFFFGIDVNLPPPPPPSAPCYEENGVSSPNSAVSSISGKRSEREENERGSCSRGGSEDDDGGGCGGDGDGDGDTSRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTEDNRRLQKEVQELRALKFSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSASLPSVPPPPANHNPLGPTIRRPVPVNPWAAMSIQRRPPP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00113 308 FunFam Homeobox-leucine zipper protein 18 133 206 - -
Viun10g00113 308 MobiDBLite consensus disorder prediction 83 147 - -
Viun10g00113 308 MobiDBLite consensus disorder prediction 1 47 - -
Viun10g00113 308 MobiDBLite consensus disorder prediction 18 47 - -
Viun10g00113 308 Pfam Homeobox associated leucine zipper 201 234 IPR003106 GO:0006355|GO:0043565
Viun10g00113 308 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Viun10g00113 308 SMART HOX_1 143 205 IPR001356 GO:0003677
Viun10g00113 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 273 - -
Viun10g00113 308 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Viun10g00113 308 MobiDBLite consensus disorder prediction 107 124 - -
Viun10g00113 308 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Viun10g00113 308 CDD homeodomain 145 202 IPR001356 GO:0003677
Viun10g00113 308 SUPERFAMILY Homeodomain-like 132 202 IPR009057 -
Viun10g00113 308 Coils Coil 207 234 - -
Viun10g00113 308 Gene3D - 149 199 - -
Viun10g00113 308 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Viun10g00113 308 Pfam HD-ZIP protein N terminus 1 113 IPR006712 GO:0005634
Viun10g00113 308 MobiDBLite consensus disorder prediction 264 308 - -
Viun10g00113 308 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00113 Viun-Chr10 715227 719581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00113 22 306 Homeobox Transcription Factor Family AT3G60390 57.285 3.00e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun10g00113 HD-ZIP_N 4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00113 K09338 - gmx:100798480 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00113 10 715227 719581 Viun10g00113 10 715227 719581 ECH
Viun10g00113 10 715227 719581 Viun5g00634 5 3884746 3887932 PCT