Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00109 ATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGACACCGGGTCAACCCAAGCTACAAGGTTGACCGCTGCTCGTCAGATAGGGGACATTGCAAAATCACATCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATATCTCCGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGATCAATTGCTGAGAATGTTAAGCACATACATTTGACTGAACTTTTTGCTTCTGTTGTATCAAAAATGAGTGAGAATGGGATATCTTGTAGCATTGAGGATCTGTGTGCATGGCCATATTTACAATCAAAAATTACAGGAAGCTCATTCAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGTGCCTTACTAGCTTCAGGGGGGCAGGAATATGATATTGGAAATGATAGTATAAAGAACCCAAAGGAGCGATTGGTTCGACAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGACGAAGATCTTATGGTGTCCAAATCAGACCCACATCTGAATGGGATTGATCGTAGAGTTTTTACTTCTTGTTCTGCACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGCGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCAAAGGACCAGACAAAAAGCTGGTGTGAAGATGGAGGTACAGAGGCATCAGGTGCTCAAAGTTTGACTCCAAAAGGCACATGTCCTGATTCACTGAATTACAGTAAGGTATTCATGGATGTTAATCATGACGACGATGGCTTTGAGCATGATGGGGATGGGCAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATAGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGCGTGATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGCGTATTTAAACCTGACTCACACATGGGTGGGACCCTGTTTATTGAATTGGAAAACAAAAGTATACCAACCACATTGAAGAGAGAGAGGGAAATTGATTTAAATATTGTAATGAATCTACTGGCAGAAATCTATTCTCAAGAAGATATGGCGCCAAATATGTATGAAGTTTTGAGATTGGGAGACAAGGAAATGGAAAATGGAGGTGGTGGTTCTTGTGATGGCGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTTCGCTATTCTGCAATACGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATCGTATTCCAGAATTTGCTATTGGAAACAAATGAAGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTATGGAGGACTTGGAGATGGCTGCAAGTTCTTACGGGTCTTCTTGGATTGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCCTCAAAGATGTACTGGCCAGTTGCTTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAACGGGGTTTGGAATTTAGTCTTGATTCTATTAAAGGAACTATTCCACAAGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTTGTCGGTGCTGATGTGGACACATCTGTTACTCATACCCGAGTAGTTACAGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGTGGGTTCTTTAAAATATGTGATTGATCCACTATGGAGCTCTCTAACCTCTTTCTCTGGTGTCCAACGACAGGTTGCATCTATGGTACTTATTTCTTTGTTCAAGGAGATTAAGCTCAAGAATTCGTCCAAAAACCTTGATGGTATACCTGGTGCCCTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAAATGCGCAGTGAGGCTGGTCAATTACTAAATGTAGTCAAGTCTTCTGGTATGTTTGATGAGTTATTGACAGCAACACAAATTGAGTTGGACCGCTTGAGTGTGGATGACGCTATTGGTTTTGCTTCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCAAATGAGTCCTTGGCAAAGAACATCATGGATGATATTGAATCCTCCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGCGTTCAGAGCAACTTGCATGTTACAGTCACTTCTGCAGTTGCGGCTGCCATTGTCTGGATGTCTGAATTTCCTACACGACTTACACCAATCATTTTACCTTTGATGGCTTCTATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAAGCCCTTGCTGAGCTAATGTATCACTGTGTTGCACGTAAACCTTGCCCCAATGATAAATTAATTAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCGCTTTGTACCATTGAGAGTATCGATGACCAAGGTCTTCTGTCTTTTAGAACTCCTGTGAGCAAACAGAAGTCAAAGGTCCATGTGCTAGCTGGTGAAGATCGTTCGAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTATCATTGAGGCTTCTATGTGAAAAGTTTGGTGCATCATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTATAGAGGACACTGAGGAAAAGCAAGTTACTGTGTCTATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCCGTGTTAACAGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCCATGCATCTTCAAGTGTGTTCAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATCACTTCCCTGGCACAGTCAATGACTGCGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCAATGTTGGAAGATTCATCATCTGTTTATGCTCGACAAGGTGCAGGCATGTTGATTAGTTTTCTAGTTCAGGGGTTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTTTGAGGTGTATGAGTGATTGTGATCAGTCTGTTAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCTCGGGGCCTTCCTCAACCAATTGGACTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTGCAGTTTTTAGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAATCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGGAATACAATTGGGAATGAGGATCCTCTGGCTTCTTTAATTATCTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCTAGTCTTCAATATGTTGGTTCTGCTCAGGAACGAATGCTTCTTCGAGATCAGTTTTGTAAGCATAATGTCATTATAACATCATATGATGTTGTGCGTAAAGATGTTGATTTTCTGGGACAGCTACTCTGGAATTACTGCATTTTAGATGAAGGGCATATAATAAAAAATGCGAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCTATACAGAATAATATAATGGACTTGTGGTCCCTCTTTGATTTTCTGATGCCAGGCTTTCTTGGAACCGAGAGACAGTTCCAAACTGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTGGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTACGAGCAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCTGTACCAGAAGGAAGTGGCACTTCTACTAAAGCGTCTTCACATGTCTTCCAGGCACTCCAATATTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCACTGGTGAGAAGATTCCAGATTCACTTTCTCCCATCCTCTTAGAACTGTTTCCTGCTGGCTCTGATATTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTAGAAGAATGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGGTGCAGTTAACGTTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGCATCGGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTATTGCTTACAACACATGTCGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGACTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTGTCCGTGGCTAATGCTGTTATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAAAAGGGTGGTAATGCTGTAAAGAGCTCAGAGAACAATTCTGATGGAGACGCAAAATTAGTAGGCAGTGGGAAGAGATTGAAATCGATACTCGGCGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCGAGGCTTAATGGCTAA 5283 0.4117 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHIHLTELFASVVSKMSENGISCSIEDLCAWPYLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIGNDSIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMVSKSDPHLNGIDRRVFTSCSAHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGGTEASGAQSLTPKGTCPDSLNYSKVFMDVNHDDDGFEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSHMGGTLFIELENKSIPTTLKREREIDLNIVMNLLAEIYSQEDMAPNMYEVLRLGDKEMENGGGGSCDGDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSMEDLEMAASSYGSSWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENERGLEFSLDSIKGTIPQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGYFASKLPVGSLKYVIDPLWSSLTSFSGVQRQVASMVLISLFKEIKLKNSSKNLDGIPGALKGWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTATQIELDRLSVDDAIGFASKIPALCNDSSANESLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAIVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARKPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPIEDTEEKQVTVSIESVSDPQTLINNIQVVRSVAPVLTEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTAKVMGAVVENAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQSSAIVASDIAEHRNTIGNEDPLASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDQFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQTAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAVPEGSGTSTKASSHVFQALQYLLKLCSHPLLVTGEKIPDSLSPILLELFPAGSDIVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVASEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGGNAVKSSENNSDGDAKLVGSGKRLKSILGGLEELWDQSQYTEEYNLSQFLARLNG 1760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00109 1760 Gene3D - 910 1122 IPR011989 -
Viun10g00109 1760 Pfam Domain of unknown function (DUF3535) 498 952 IPR022707 -
Viun10g00109 1760 Pfam Helicase conserved C-terminal domain 1540 1642 IPR001650 -
Viun10g00109 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1147 1396 IPR027417 -
Viun10g00109 1760 CDD SF2_C_SNF 1511 1653 - -
Viun10g00109 1760 CDD DEXHc_Mot1 1164 1396 IPR044078 GO:0005524
Viun10g00109 1760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1176 1346 IPR014001 -
Viun10g00109 1760 FunFam TATA-binding protein-associated factor 172 1406 1723 - -
Viun10g00109 1760 MobiDBLite consensus disorder prediction 251 266 - -
Viun10g00109 1760 MobiDBLite consensus disorder prediction 245 266 - -
Viun10g00109 1760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1532 1688 IPR001650 -
Viun10g00109 1760 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Viun10g00109 1760 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1134 1395 - -
Viun10g00109 1760 SUPERFAMILY ARM repeat 6 1203 IPR016024 -
Viun10g00109 1760 SMART helicmild6 1556 1642 IPR001650 -
Viun10g00109 1760 Pfam SNF2-related domain 1182 1478 IPR000330 GO:0005524|GO:0140658
Viun10g00109 1760 Gene3D - 4 92 IPR011989 -
Viun10g00109 1760 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 343 IPR044972 GO:0003677|GO:0016887|GO:0017025
Viun10g00109 1760 SMART ultradead3 1160 1356 IPR014001 -
Viun10g00109 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1397 1698 IPR027417 -
Viun10g00109 1760 Gene3D - 1406 1723 IPR027417 -
Viun10g00109 1760 FunFam TATA-binding protein-associated factor BTAF1 916 1122 - -
Viun10g00109 1760 Gene3D - 1136 1395 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00109 Viun-Chr10 685286 712017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00109 1159 1697 RAD5 or RAD16-like Gene Family AT1G02670 26.252 8.89e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun10g00109 DUF3535 5.4e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00109 K15192 - gmx:100777977 2497.62