Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00107 ATGTCTCTCCACCGCCATGTTTGCAGAACCTCAAAGCTATCAAAGATCCCTTGGAAGTACAAGCAGTTCGCCATAGCACAGGGGCAGAAGACTGTTACTGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTTCGCTGATCAAATCTCCAAGAACTCCAACACTGCCCTCATCAATCTCATCACCAAGCTCAGTGCTTTCTCCCCTCCCCACTATCCCCACAACCTCAACAAGTTCCTCAGGTACAACCCCATCAACGAATTTGAGTTCTTCTTTGAGAGCATTGGCATCCACCCTTCAAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGAAGATGAGACCCTTTTGGACGCTGCTTGTGTTCTCAGCGAATTTGGGTTTCCCTGGGACAAGCTTGGGGTGCTGTATGTGGAGAGTGGGTGGGTGTTCAAGTGGGCTGCTTCGGAGTTGAAGGACAGGCTCTGTGAGTTCAAAAGGTATGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCTTGGCTTTCCCCTTTGTGTTTGATGGCCAAAAGGGTGCTGAGGTTGAGGCTTTGTTTTGTGATCTGAGGTTACTGTTTGGGAAGTTTGGTTTGGCTGGGTGTGTTGAAGAGAAGGGGAATGGTGTGGATGATTGGATTGGGTTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGGAAGAAGAACATAGGGGAGTTAATTGGAGGGAACAATGGCGTTGGTGTAGGTGTTGTTGTTGAGCATGGGGAAGAGGAGTTGGTTCAAGTAATTGAGTATTTTTGTAGGTTTGGTGCGAAGAAAGAGGACGTGGCACGATTGATTGTGAATGGACCGGAATTGTTGGAGCTTGTTTTGAAGATGAGGATGGTCAATGTGTTGAAGCTGTTGAAACACTTTGGAATGAGTTCCAATGAAGTTGATATTTTTAGGAAGGACTATGCTCATGTGTTGGGGACAGTCAAGCTGTGTAACCTGCCAAATGTGATGAGAGCTTTGGGTTTACATGAGTGGTTCTTTGAGAAGATTAAGGATGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCCAAAAATCCCAAGGTGGTCCGAGATAAAGGTTATCGAAGTTTTTTGAAGGGTATTGAGGTGTCTAGAACTCCAACTCACAGTATGAGTAAGTTGAACTTCTTGCATGGCATTGGCTTTGGAGAAAATGCTTTGACCATGTATATTTTCTCTTATATGCACGGAACAAGTGATGAGTTACAAAAAAGATTTGATTGCCTTCTACACCTTGGGATTGAGTTTTCAAAGGTCTGTAAAATGATCACGGTTCATCCAAAGATTCTTAGCCAAAACCCTGAAAGTTTGGAGCAAAAGATTAATTTCTTGTGTCAAGAAATGGGACAGTCACTTGAGAATTTGGTCACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCTAGGTATAGATTCCATTTGTGGATTATAGAAAAGGGTCTATCTTCCAAAATATATTCTATTGCAAGCATGGTTGCAACAAGCAACAAGAATTTTGTTTCCCGTGCTTTTAAAATCCACCCTGCTGCTCCAAAACATTGGTTTGAGCAATTTTATCCCTGA 1644 0.4319 MSLHRHVCRTSKLSKIPWKYKQFAIAQGQKTVTDYLHATRCIPYAFADQISKNSNTALINLITKLSAFSPPHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSEDETLLDAACVLSEFGFPWDKLGVLYVESGWVFKWAASELKDRLCEFKRYGFCNVQVVGICLAFPFVFDGQKGAEVEALFCDLRLLFGKFGLAGCVEEKGNGVDDWIGLCRKIRLFYDLNGGKKNIGELIGGNNGVGVGVVVEHGEEELVQVIEYFCRFGAKKEDVARLIVNGPELLELVLKMRMVNVLKLLKHFGMSSNEVDIFRKDYAHVLGTVKLCNLPNVMRALGLHEWFFEKIKDGNHSLLVSFVAKNPKVVRDKGYRSFLKGIEVSRTPTHSMSKLNFLHGIGFGENALTMYIFSYMHGTSDELQKRFDCLLHLGIEFSKVCKMITVHPKILSQNPESLEQKINFLCQEMGQSLENLVTFPSFLCFDLENRIKPRYRFHLWIIEKGLSSKIYSIASMVATSNKNFVSRAFKIHPAAPKHWFEQFYP 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00107 547 FunFam Transcription termination factor MTEF18, mitochondrial 381 541 - -
Viun10g00107 547 Gene3D Transcription termination factor 3, mitochondrial 257 545 IPR038538 -
Viun10g00107 547 PANTHER CGI-12 PROTEIN-RELATED 32 533 IPR003690 GO:0003690|GO:0006355
Viun10g00107 547 Gene3D Transcription termination factor 3, mitochondrial 69 205 IPR038538 -
Viun10g00107 547 Pfam mTERF 422 526 IPR003690 GO:0003690|GO:0006355
Viun10g00107 547 Pfam mTERF 259 329 IPR003690 GO:0003690|GO:0006355
Viun10g00107 547 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Viun10g00107 547 SMART mt_12 475 509 IPR003690 GO:0003690|GO:0006355
Viun10g00107 547 SMART mt_12 443 474 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00107 Viun-Chr10 677327 680333 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun10g00107 mTERF 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00107 - - var:108346236 894.419