Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00091 ATGCACGGGAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGACGAGGTTCTACTGAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGAACTGGCAAGTCCTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTTGAGGAAGAGAGGATTGTGATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTTTTTGACAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCCAGGATTCTGCAGACATCAGGAACAACTTCCAAATCACAGAAGAGCAAAACAAAAGTTCCTACCCTTCTTGATGTTCCAGTTTTCGAGGCTCCAAAGTTCAGTTCTTCATCTGAGGGAGAGTCATCATCAAAACCTCAGTCATGCTCACTACCCTTGATTGAGAATTCTGAGGTTATCAAAATGGTATCTTTGCCAGATCTCATAAAGTCTGAGTTACCTAGTTCTGACCCAATCCATGTCGAACAAGATTTTACCCTTTTTGAGAGCTATAACAGTAGTGAGCAGACTCAACAGATTTCCTTTCCTCAGATTCCAGAACTCCAAAATGATCTCACATTCCCAATGGGAAGCCAAGATGTCTTAGCCAGAATCGATGAACCATATTTCGTTGAAGACTTTTTTGCTCTTGATGATGCATCTGAGTTTGGAATAGATCTGCAGCACCCCTTTGGATTCCCTTTCTTCGAGCCACCAGGAAGTTGCAGAATTGAGACAAGGGACACCGTTGATAAGTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTATGGACATGTTTGATAACATGGACCCACCTCCAAGCCCTTCTTCAAACTTATTATGA 954 0.4329 MHGKKEQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNRWAKIASFLTGRTDNDVKNFWSSRQKRLARILQTSGTTSKSQKSKTKVPTLLDVPVFEAPKFSSSSEGESSSKPQSCSLPLIENSEVIKMVSLPDLIKSELPSSDPIHVEQDFTLFESYNSSEQTQQISFPQIPELQNDLTFPMGSQDVLARIDEPYFVEDFFALDDASEFGIDLQHPFGFPFFEPPGSCRIETRDTVDKFKSSDSFFDDFPMDMFDNMDPPPSPSSNLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00091 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Viun10g00091 317 Pfam Myb-like DNA-binding domain 69 108 IPR001005 -
Viun10g00091 317 SMART sant 12 62 IPR001005 -
Viun10g00091 317 SMART sant 66 114 IPR001005 -
Viun10g00091 317 CDD SANT 69 108 IPR001005 -
Viun10g00091 317 CDD SANT 15 60 IPR001005 -
Viun10g00091 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Viun10g00091 317 FunFam MYB transcription factor 13 65 - -
Viun10g00091 317 Pfam Myb-like DNA-binding domain 16 66 - -
Viun10g00091 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun10g00091 317 FunFam Transcription factor GAMYB 68 137 - -
Viun10g00091 317 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Viun10g00091 317 PANTHER TRANSCRIPTION FACTOR DUO1 3 314 - -
Viun10g00091 317 Gene3D - 13 65 - -
Viun10g00091 317 Gene3D - 68 137 - -
Viun10g00091 317 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00091 Viun-Chr10 617859 620065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00091 1 312 MYB Transcription Factor Family AT3G60460 50.000 2.45e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g00091 Myb_DNA-bind_6 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00091 K09422 - gmx:100805384 450.284