Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00085 ATGTTTGGACGTGGGCCGAGGAAGAGTGATAACTCCAAATATTATGATGTTCTTGGAGTTTCAAAGAATGCCACTGAAGATGAAATCAAGAAGGCATACAGAAAGGCTGCTATGAAGAATCATCCAGATAAAGGTGGAGATCCTGAGAAGTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATTCGGAGAAGAAAGAATTGTATGATCAGTATGGGGAAGATGCCCTTAAAGAAGGGATGGGAGGAGGAGGAGGTGGCTCGTTTCATAATCCATTTGATATATTTGAGTCATTTTTTGGAGGATCAAGCTTTGGTGGTGGTAGTTCTCGAGGCAGAAGACAAAAACATGGTGAAGATGTGGTGCACTCTTTAAAAGTGTCCTTGGAGGATGTCTATAATGGTGCAACTAAGAAATTATCTCTTTCTAGAAATGTTTTATGCCCAAAATGTAAAGGGAAAGGGTCAAAAAGTGGAGCAGCTAGTAGGTGTTTTGGTTGCCAAGGCACTGGTATGAAGGTCACAAGAAGGCAGATAGGACTAGGCATGATTCAACAAATGCAGCATGTCTGCTCGGACTGCAAAGGATCTGGTGAGGTTATTAGTGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAGGTTACTCATGAAAAGAAGGTACTGGAGGTGCATGTTGAAAAGGGGATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTCCTGATGCATTGACAGGGGACATTGTTTTAGTATTGGCAGTGAAGGAGCACCCAAAGTTCAGAAGGGAGCGAGATGATCTCTTCATTGATCACAATCTCAGCTTACGTGAGGCACTCTGTGGCTTCCAGTTTGCTATCACACATCTTGATGGCAGGCAATTACTGATCAAATCAAACCCTGGGGAAGTCATCAAGCCAGGTCAATCTAAAGCAATAAATGATGAGGGAATGCCACAACACAACAGGCCATTCATGAAGGGTCGACTCTACATCCAGTTCAATGTTGAATTCCCAGACTCAGGGTTTATTTCCCCTGATCAATGCCAGTTATTGGAAAAGGTATTACCTCAGAAGGGCAGCAAGCGCATTTCAGATGCAGAGCTTGATGACTGTGAGGAGACCACTTTGCATGATGTGAACTTGAAGGAGGAGATGAAACGAAAGCATCAACACCATTACCGGGAGGCATACGATGAAGATGAAGATGAAGGTCCTTCTGGTGGTCACCGAGTGCAATGTGCTCAACAGTAG 1269 0.435 MFGRGPRKSDNSKYYDVLGVSKNATEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDSEKKELYDQYGEDALKEGMGGGGGGSFHNPFDIFESFFGGSSFGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGATKKLSLSRNVLCPKCKGKGSKSGAASRCFGCQGTGMKVTRRQIGLGMIQQMQHVCSDCKGSGEVISERDKCPQCKGNKVTHEKKVLEVHVEKGMQQGQKIVFEGQADEAPDALTGDIVLVLAVKEHPKFRRERDDLFIDHNLSLREALCGFQFAITHLDGRQLLIKSNPGEVIKPGQSKAINDEGMPQHNRPFMKGRLYIQFNVEFPDSGFISPDQCQLLEKVLPQKGSKRISDAELDDCEETTLHDVNLKEEMKRKHQHHYREAYDEDEDEGPSGGHRVQCAQQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00085 422 CDD DnaJ 14 63 IPR001623 -
Viun10g00085 422 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Viun10g00085 422 PRINTS DnaJ domain signature 46 66 IPR001623 -
Viun10g00085 422 PRINTS DnaJ domain signature 15 33 IPR001623 -
Viun10g00085 422 PRINTS DnaJ domain signature 66 85 IPR001623 -
Viun10g00085 422 Gene3D DnaJ domain 10 111 IPR036869 -
Viun10g00085 422 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Viun10g00085 422 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 401 IPR044713 GO:0006457|GO:0030544
Viun10g00085 422 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Viun10g00085 422 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Viun10g00085 422 FunFam DnaJ subfamily A member 2 149 215 - -
Viun10g00085 422 FunFam Chaperone protein DNAj, putative 10 113 - -
Viun10g00085 422 Gene3D - 264 345 - -
Viun10g00085 422 SMART dnaj_3 12 66 IPR001623 -
Viun10g00085 422 Hamap Chaperone protein DnaJ [dnaJ]. 10 372 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun10g00085 422 SUPERFAMILY Chaperone J-domain 10 108 IPR036869 -
Viun10g00085 422 MobiDBLite consensus disorder prediction 388 422 - -
Viun10g00085 422 CDD DnaJ_C 120 346 - -
Viun10g00085 422 Gene3D - 149 215 - -
Viun10g00085 422 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Viun10g00085 422 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 346 IPR008971 GO:0006457|GO:0051082
Viun10g00085 422 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Viun10g00085 422 Pfam DnaJ domain 13 71 IPR001623 -
Viun10g00085 422 Gene3D - 112 263 - -
Viun10g00085 422 FunFam DnaJ subfamily A member 2 263 345 - -
Viun10g00085 422 MobiDBLite consensus disorder prediction 388 413 - -
Viun10g00085 422 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 217 IPR036410 -
Viun10g00085 422 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00085 Viun-Chr10 565793 570205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00085 14 114 C2H2 Transcription Factor Family AT1G74250 36.937 2.03e-09 57.8