Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00071 ATGAACGATCTTCTCACTGATTCATTTGTTGGTGGGGCTGGTAATGGCCAGCCTTCTAGAGAAACTGACATTGAAATGGGACAGGTTCCCAGAAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGTTGATAAACAGATCGATAAGCTGGCGGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCACCTGCCATGAAAGGTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCTCATGGTGTCAAAACAAAGATAGAGGCTATAAACAGAGATAACCTATCCAATAGACAAAATCCTGGTTGTGAGAAGGGAACAGGTATTGATAGAGCAAGAATGAATATGACAAATGCCTTGGCTAAAAAGTTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTCGTCGAGAGGAGAGTGATAACAGTTACTGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATTCTAGAAGCAGGCCGAGGACAGGTAGTAAACACAGTAGAAGAAATCCAAGAGAGACATGATGCTGTGAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTCTAGATAACATTGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAATGCTAAGAAACTGCAGAAGAACTCACGAAAATGGATGTGCATTGCCATAGTTATACTGTTGATAATAGTAGCTATCATAGTTGTGGGTGTTCTCAAACCTTGGAAGAGTAGCTAG 921 0.4061 MNDLLTDSFVGGAGNGQPSRETDIEMGQVPRSNSDMGMEAFNKQIHEVDKQIDKLAVLLQKLKEANEESKAVTKAPAMKGIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLSNRQNPGCEKGTGIDRARMNMTNALAKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQNAKKLQKNSRKWMCIAIVILLIIVAIIVVGVLKPWKSS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00071 306 Coils Coil 45 75 - -
Viun10g00071 306 MobiDBLite consensus disorder prediction 1 34 - -
Viun10g00071 306 SMART SynN_4 33 159 IPR006011 GO:0016020
Viun10g00071 306 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Viun10g00071 306 Gene3D - 201 301 - -
Viun10g00071 306 FunFam Syntaxin 132 33 162 - -
Viun10g00071 306 PANTHER SYNTAXIN 37 290 IPR045242 -
Viun10g00071 306 SMART tSNARE_6 203 270 IPR000727 -
Viun10g00071 306 Pfam SNARE domain 244 296 IPR000727 -
Viun10g00071 306 FunFam Syntaxin 132 201 301 - -
Viun10g00071 306 CDD SynN 38 195 IPR006011 GO:0016020
Viun10g00071 306 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Viun10g00071 306 CDD SNARE_syntaxin1-like 207 268 - -
Viun10g00071 306 Gene3D - 38 166 - -
Viun10g00071 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00071 Viun-Chr10 468743 472638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00071 1 303 SNARE and Associated Proteins AT3G03800 62.376 1.71e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00071 K08486 - gmx:100800991 550.436