Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00069 ATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACCGGAAACGAGGAGACCGCCGCCGGGGCTTCCGACCAGACGCACCGTCAAATCTTCGACCACTACGCGTCGCACTCGCTCATCCCCGACCACTTTCTGCACGCGCCAACTCACTCCGCCGTCACCACCGCCGCGGCCGCCACCGTTGAGTTCACCAACCACCACCACCACTTCAACCCGCAGCCGCACCACCACCAAGTCAACAACCACCACCACCACCACCCGTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTCCGCCTCCTACCCTCCACCCCCTTCCATGCTCTCGCTTGACCCGCTGCCCCACGTCAACGCCGCCAACTGCGGCCCTGGGCCCGGCCCCGGCCCGGGCGGACTCCTCCTCGTTCCCAAGTCCGAGGACGTGGGACGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTGAATCTCGGTGGCCGGACGTATTTCTCCTCCTCCGAGGACGATTTCGTGAGCCGTCTCTACCGTCGGTCCCGGCCGGCGGAATCCGGTTCGGCGGCTTCCTCCAACTCCCCGCGCTGCCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTCTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCACAATCGCCGCAGAAGAAAAACTCAGCAACCATCTCAAGAAATTCAGAAATCTCAACCCTCTTTGGATAATGTTGCAAGATCTCCACCTGACTCCGGAGCCCAGTCTTCGTCGGTGACGGTGGCGGTGTCACCGCCGGACTATTTCCGGCAGAGGCCGTATCAGAGCGCGAACCCTTCCACAAATTCAAGCTCACTGTTTTTCTCCAGCGGGTAG 1002 0.6088 MLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSAVTTAAAATVEFTNHHHHFNPQPHHHQVNNHHHHHPFFDPRAFHGASSASYPPPPSMLSLDPLPHVNAANCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPSQEIQKSQPSLDNVARSPPDSGAQSSSVTVAVSPPDYFRQRPYQSANPSTNSSSLFFSSG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00069 333 Gene3D - 186 257 IPR036893 GO:0003677|GO:0005634
Viun10g00069 333 MobiDBLite consensus disorder prediction 274 306 - -
Viun10g00069 333 ProSiteProfiles Zinc finger SBP-type profile. 193 270 IPR004333 GO:0003677
Viun10g00069 333 MobiDBLite consensus disorder prediction 313 333 - -
Viun10g00069 333 MobiDBLite consensus disorder prediction 75 111 - -
Viun10g00069 333 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 178 324 IPR044817 GO:0003677
Viun10g00069 333 SUPERFAMILY SBT domain 194 273 IPR036893 GO:0003677|GO:0005634
Viun10g00069 333 MobiDBLite consensus disorder prediction 262 333 - -
Viun10g00069 333 Pfam SBP domain 196 269 IPR004333 GO:0003677
Viun10g00069 333 FunFam Squamosa promoter-binding-like protein 14 187 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00069 Viun-Chr10 439233 442114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00069 1 243 SBP-box Gene Family AT1G02065 43.846 1.07e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun10g00069 SBP 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00069 - - gmx:100802206 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00069 10 439233 442114 Viun10g00069 10 439233 442114 ECH