Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00068 ATGGACTTTGGAGACACCACCAACACCTTCACCCTCACCACCCCCACCAAAGAGGAAACAACCACTAACAACATTCTTTGCTACTCCTCATGGCTACAACCTACTCCTAATTCTACCCACACCACCACGCCGCCGCCGGACACCTACGCCGCCGGAGAAGGGTCTCACGTGCACTGGGACCCTCACCTCACGTGCTTGCATCTTGGTAAGAGACATTACTTTGAGGATGTTACTGATGACGATGTTTATAATAATGTTATTACACTTGGAAACAGACACGTGTACGGCGGCGATGGCGGTTCCGGTTACTTTTCAGAGGGTAACGATAAGAGAGCGCGGGGTGGTCATGGAGGAGCTGGCGGTGGCGGGAGCGTGAAAACGGCGGCGTTTGCGGTGGTTCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGTTGGTGAACGCGAAAGAGTACCACAGGAGGCACAGAGTTTGTGATATGCATTCGAAGGCACCCAAAGTTGTGGTGTTGGGTTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCGGAGTTTGACGAGACAAAGAGAAGTTGCCGGAGAAGATTAGCGGGGCATAACGAGAGAAGAAGAAAAAGCTCTCACCTTTCTGTTACCAGAAGTTGTAGACAAGGGTGTGGTCTCTCTCTTGTGTCATTTGGGAGCAGTGATGATTGGTGTTCTAATCATCATTCTGATGATCTCTCCACAAGATGCAGTGCAGCACTGCGTGAACTCATAGCAGAAAACCGTGCTGCCCTAATCACCAGACAACAACATGTTTATGTTGTGCCCCACCATGAAGAAGAAGAACAAGGGTTTGTGGAGATGCTACAACCTGAGTCCAATTATTTTCCTCAACACATGTTTTCTCAGACACAACAATAA 918 0.5 MDFGDTTNTFTLTTPTKEETTTNNILCYSSWLQPTPNSTHTTTPPPDTYAAGEGSHVHWDPHLTCLHLGKRHYFEDVTDDDVYNNVITLGNRHVYGGDGGSGYFSEGNDKRARGGHGGAGGGGSVKTAAFAVVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDETKRSCRRRLAGHNERRRKSSHLSVTRSCRQGCGLSLVSFGSSDDWCSNHHSDDLSTRCSAALRELIAENRAALITRQQHVYVVPHHEEEEQGFVEMLQPESNYFPQHMFSQTQQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00068 305 FunFam Squamosa promoter-binding-like protein 14 127 197 - -
Viun10g00068 305 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 69 229 IPR044817 GO:0003677
Viun10g00068 305 Gene3D - 129 197 IPR036893 GO:0003677|GO:0005634
Viun10g00068 305 ProSiteProfiles Zinc finger SBP-type profile. 133 210 IPR004333 GO:0003677
Viun10g00068 305 Pfam SBP domain 136 209 IPR004333 GO:0003677
Viun10g00068 305 SUPERFAMILY SBT domain 134 212 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00068 Viun-Chr10 408197 409596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00068 133 216 SBP-box Gene Family AT2G42200 70.238 5.32e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun10g00068 SBP 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00068 - - pvu:PHAVU_010G056200g 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00068 10 408197 409596 Viun10g00068 10 408197 409596 ECH