Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00052 ATGGCAGCTTCAACACTGTCTTTCGCTCTTCTCCTTCCTCTCATCTTCTTCCATACTTTCCATGCTTCATCTTCATTCTCTCTCTCCGTCGAGAACTTCAAAGAAGATGTCATACTATCACCCAAAAAAACATTCACAGCAGGCTTTTACGCCGTCGGACAAAACGCTTTCTGCTTCGCGATATGGTACACGCGCTCACCGGACACCGTCGTTTGGATGGCCAACCGGGACCAACCGGTTAACGGAAAACGCTCCACACTCTCTCTTCTCAAAACCGGCAACCTCGTACTCACCGACGCCGGTCAGTTCCAAGTGTGGTCCACCGGCACCGCCAACTCATCCAGACAAGTCCGCTTACATTTGCACGACACCGGCAACCTCGTACTCCTCGAAGATTCCCCCGACAACGCTGTCTTGTGGCAGAGCTTCGAATTCCCAACCGACACGCTTCTTCCGAATCAGCCTCTGAGAGGGAGCACCAATCTCGTTTCCTCGAGAAGCGGGAGCAACCACTCCTCCGGTTTCTACAAGCTCTTCTTCGACTTCGAGAATGTTCTGCGGCTCATGTACCAGGGTCCTCGAGTTTCTAGCGTTTTCTGGCCCTACGCTTGGCTTCAGAGCAACAACTTTGGTAATGGCAACAGCAACGGCAGATCCACTTTCAACGATAGCAGGGTTGCTGTGCTTGATGAGTTGGGTGGCGTGCTTTCTTCCGACAACTACACTTTCAGAACCATCGATTACGGGACGGTGCTTCAGCGGAGATTGACCCTCGATCACGACGGTAATGTGCGGGTCTACACCATGAAACATGGACAAGAGAAGTGGGTTGTGTCGGGGCTGATTCGCCAACAACCTTGTTTTATTCATGGCATTTGTGGACCCAACAGTTATTGTACCAATGACCCAACAACTGGAAGAAAGTGTTCCTGCCTTCCAGGTCACAGATGGAATGATACTGAAGACTGGACTCAAGGTTGCATACCGAATTTTGATCCTTGGTGCAACAACACTAAGCATGAGTCTCGTTTCGTGGGTTTAGCTCAATTTGATTTTTATGGATATGACTATGGCTTCTATCAGAATCACACTTACGAACAATGTGTGAATCAGTGCAAGCGGTTGTGCGAATGCAAAGGGTTTCAGTTCAGTTTTTCGGACCAAGGTAGTTTTGGTAGTCAGTGCTACCTGAAGACACAGTTGCTGAATGGGCATCACTCGGCAAGTTTCTCGGGAATGTTCTACCTGAGACTGCCTTTGTCTTACAACCGTGAGAACCCCATCAGTAATGGTTTGGTTTGTGGGGCAAATAGCAGAGTGGAAGAACTAAAAAGACCGTATGTGGAAGAAAAAGAAAATGGGTCTGTTTGGTTCATGCTGTGGTTTGCGGTTGCCTTGGGAGGACTTGAGGTTCTGTGCTTCTTTCTGATGTGGTGTTTTTTGTTTAGGAATAATGCCGACAAGCATGCCTATGTTCTTGCTGCAGAAACAGGGTTCAGGAAATTCGGTTATTCAGAATTGAAACAAGCATCCAAAGGTTTCAGTGAAGAGATTGGAAGGGGTGGTGGAGGTACAGTGTATAAAGGTGTCTTGTCTGATGACCGGGTTGTGGCAATAAAAAGACTACATGAAGTGGCAAACCAAGGAGAAAGTGAGTTCCTGGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTTAGGGTTTTGTGCTGAGGGAAAGTATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTAGCTCAGAACCTTTCATCGAGTTCAAATGTTCTTGATTGGACCAAGAGGTATAACATTGCTCTGGGAACTGCAAGGGGTCTTGCTTACTTGCATGAAGAATGCTTGGAGTGGATTCTGCATTGTGATATCAAGACCCAAAATATACTTCTTGACTCTGATTACCAACCTAAAGTAGCAGATTTTGGCTTGTCTAAGCTACTTAACCGGAACAACCTCGACAATTCAACCTTCTCGAGGATACGAGGAACAAGAGGTTACATGGCTCCAGAGTGGCTTTTTAACTTGCCAATCACTTCCAAGGTGGATGTCTACAGCTATGGCGTTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACAGCAGGTATCCAACTCACAGAATTAGATGCAGAATCACATAATCATGCGAGGTTAGTGACATGGGTGAGGGAGAAAAGGAAGAAAGGGTCAGAAGTGGGATCATCTTGGGTGGATCAAATAGTTGACCCTGCTTTGGGATCAATGTATGATAGGAATGAAATGGAGATATTAGCTACGGTGGCTTTGGAATGTGTAGAGGAAGAGAAAGACGTGAGACCCAGCATGAGTCATGTTGTTGAGAGGCTCCAAAGTTACGAGCACAATTCTTGA 2409 0.4658 MAASTLSFALLLPLIFFHTFHASSSFSLSVENFKEDVILSPKKTFTAGFYAVGQNAFCFAIWYTRSPDTVVWMANRDQPVNGKRSTLSLLKTGNLVLTDAGQFQVWSTGTANSSRQVRLHLHDTGNLVLLEDSPDNAVLWQSFEFPTDTLLPNQPLRGSTNLVSSRSGSNHSSGFYKLFFDFENVLRLMYQGPRVSSVFWPYAWLQSNNFGNGNSNGRSTFNDSRVAVLDELGGVLSSDNYTFRTIDYGTVLQRRLTLDHDGNVRVYTMKHGQEKWVVSGLIRQQPCFIHGICGPNSYCTNDPTTGRKCSCLPGHRWNDTEDWTQGCIPNFDPWCNNTKHESRFVGLAQFDFYGYDYGFYQNHTYEQCVNQCKRLCECKGFQFSFSDQGSFGSQCYLKTQLLNGHHSASFSGMFYLRLPLSYNRENPISNGLVCGANSRVEELKRPYVEEKENGSVWFMLWFAVALGGLEVLCFFLMWCFLFRNNADKHAYVLAAETGFRKFGYSELKQASKGFSEEIGRGGGGTVYKGVLSDDRVVAIKRLHEVANQGESEFLAEVSIIGRLNHMNLIGMLGFCAEGKYRLLVYEYMENGSLAQNLSSSSNVLDWTKRYNIALGTARGLAYLHEECLEWILHCDIKTQNILLDSDYQPKVADFGLSKLLNRNNLDNSTFSRIRGTRGYMAPEWLFNLPITSKVDVYSYGVVVLEMITGRSPTAGIQLTELDAESHNHARLVTWVREKRKKGSEVGSSWVDQIVDPALGSMYDRNEMEILATVALECVEEEKDVRPSMSHVVERLQSYEHNS 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00052 802 CDD STKc_IRAK 518 796 - -
Viun10g00052 802 SMART blect_4 29 146 IPR001480 -
Viun10g00052 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Viun10g00052 802 FunFam Serine/threonine-protein kinase 588 802 - -
Viun10g00052 802 Pfam D-mannose binding lectin 69 157 IPR001480 -
Viun10g00052 802 SMART serkin_6 512 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00052 802 Gene3D Hepatocyte Growth Factor 346 415 - -
Viun10g00052 802 ProSiteProfiles Bulb-type lectin domain profile. 24 142 IPR001480 -
Viun10g00052 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 200 IPR036426 -
Viun10g00052 802 SUPERFAMILY Protein kinase-like (PK-like) 495 796 IPR011009 -
Viun10g00052 802 Gene3D - 30 144 IPR036426 -
Viun10g00052 802 ProSiteProfiles PAN/Apple domain profile. 335 419 IPR003609 -
Viun10g00052 802 CDD B_lectin 38 146 IPR001480 -
Viun10g00052 802 Gene3D Transferase(Phosphotransferase) domain 1 588 802 - -
Viun10g00052 802 PIRSF SRK 1 802 IPR024171 GO:0004674
Viun10g00052 802 Pfam Protein kinase domain 515 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00052 802 PANTHER OS07G0415500 PROTEIN 7 797 - -
Viun10g00052 802 Gene3D Phosphorylase Kinase; domain 1 480 587 - -
Viun10g00052 802 Pfam S-locus glycoprotein domain 251 316 IPR000858 GO:0048544
Viun10g00052 802 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Viun10g00052 802 ProSiteProfiles Protein kinase domain profile. 512 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00052 802 FunFam S-receptor-like serine/threonine-protein kinase 482 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00052 Viun-Chr10 281645 285171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00052 502 799 Trihelix Transcription Factor Family AT5G38560 44.518 1.47e-70 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun10g00052 Pkinase 2.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00052 - - gmx:100808408 1272.3