Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00046 ATGTACAAGGGTCCTCAAGTTTCCAGCCTTTTCTGGCCTTACGCTTGGCTTCAGAGCAGTAACTTCGGGAATGGCAACCGCAATGGTAGATCCACTTTCAACGATAGCAGGGTTGTTGTGGTGGATGATTTGGGCTATTTGGTTTCTTCTGATAACTTCACTTTCAAAACAACTGATTACGGAATGAGACTCCTACGCAGATTGACTCTTGATCACGACGGCAACGTTCGCTTTTATAGCATGAAAGACGGAGAAGACAGGTGGTCTGTGTCAGGACTATTTCAGCAACAACCTTGTTTTATTCATGGGATTTGTGGACCCAACAGTATTTGCAGCTATGAACCAAGAACCGGAAGCAAGTGTTCCTGTAGTCCAGGGTATAGATGGTTTGATATTGAAGACTGGTCTCAAGGTTGCATACCCAGTTTCCAACTTTGGTGCAACAACAGTGAGCAAAAATCTCGCTTTCTAAGCTTACCTGGAGTTGATTTTTACGGATATGACTATGCCTTCTTTGGCAATCACACCTACCGACAATGTGCGAGTCTGTGCTCGCGGTTGTGCGAATGCAAAGGGTTTCAATACAAGCCTGTGAGGGGTGCTAATGGTCAGTGCTATCTCAAGGCACAGTTGTTAAATGGCCGTCGTTCACCGAGTTCCACCAACTCATTCTTCCTGAGACTGCCTTTGCCCCTCCATGACTATGATGAGAGCGCTAGCAATAATGGTTTGGTTTGTGGAAGAAACGGTGGAGGAGCTATAGTACTTGAGAGACCTGAAAAAGAAAATGAGTTGGTGAAGTTCATGTTATGGTTTGCGATTTCCTTCGGAGGAATTGAGGTCGTGTGCATCTTTATGGTGTGGTGTTTCCTGTTTAGGAATAACGGGATGTTACCCAGACAAGGTTATGTTCTTGCAGCTGCAACGGGGTTTAGAAAATTCAGTTACTCTGAACTGAAGCATGCCACTAAAGGTTTCAGTGAAGAGATTGGAAGAGGGGGTGGAGGTACCGTGTATAAAGGTGTCTTGTCTGATGATCGGGTTGTGGCAATAAAAAGACTACATGAAGTGGCAAACCAAGGAGAAAGTGAGTTCCTGGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGCTAGGGTTTTGTGCTGAGGGAAAGTATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTAGCTCAGAACCTTTCATCGAGTTCAAATGTTCTTGATTGGACCAAGAGGTATAACATTGCTCTGGGAACTGCGAGGGGTCTTGCTTACTTGCATGAAGAATGCTTGGAGTGGATTCTGCATTGTGACGTCAAGCCCCAGAATATACTTCTTGACTCTGATTATAAACCAAAAGTAGGGGATTTTGGGCTGTCTAAGCTACTTAACAGGAACAACCTCAACAATTCAAGCTTTTCAAGGATACGAGGAACAAGAGGTTACATGGCACCTGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTGGATGTCTACAGCTATGGCATTGTTGTGTTGGAGATGATCACTGGAAGGAGTCCAACAACAGGTGCTCCAATCACAGAGTTAGAAGCAGAGTCAACTCATCATGAGAGGTTGGTGACATGGGTGAGGGAGAAAAGGAAGAAAGGATCAGAATTGGGAGCATTTTGGGTGGATGAGATCGTTGACCCTTCTTTGGGATCAAACTATGATATGAAAGAAATGGAGATATTGATCACGGTGGCTCTGGAATGTGTAGAGGAAGAGAAAAACCTGAGACCCAACATGAGCCAAGTTGCTGAGAGGCTCCAAAGTCATGACAACGAGTCAAGATAG 1848 0.4448 MYKGPQVSSLFWPYAWLQSSNFGNGNRNGRSTFNDSRVVVVDDLGYLVSSDNFTFKTTDYGMRLLRRLTLDHDGNVRFYSMKDGEDRWSVSGLFQQQPCFIHGICGPNSICSYEPRTGSKCSCSPGYRWFDIEDWSQGCIPSFQLWCNNSEQKSRFLSLPGVDFYGYDYAFFGNHTYRQCASLCSRLCECKGFQYKPVRGANGQCYLKAQLLNGRRSPSSTNSFFLRLPLPLHDYDESASNNGLVCGRNGGGAIVLERPEKENELVKFMLWFAISFGGIEVVCIFMVWCFLFRNNGMLPRQGYVLAAATGFRKFSYSELKHATKGFSEEIGRGGGGTVYKGVLSDDRVVAIKRLHEVANQGESEFLAEVSIIGRLNHMNLIGMLGFCAEGKYRLLVYEYMENGSLAQNLSSSSNVLDWTKRYNIALGTARGLAYLHEECLEWILHCDVKPQNILLDSDYKPKVGDFGLSKLLNRNNLNNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGRSPTTGAPITELEAESTHHERLVTWVREKRKKGSELGAFWVDEIVDPSLGSNYDMKEMEILITVALECVEEEKNLRPNMSQVAERLQSHDNESR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00046 615 PANTHER OS07G0415500 PROTEIN 20 609 - -
Viun10g00046 615 SMART ntp_6 151 228 IPR003609 -
Viun10g00046 615 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Viun10g00046 615 FunFam Serine/threonine-protein kinase 400 615 - -
Viun10g00046 615 ProSiteProfiles Protein kinase domain profile. 324 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00046 615 FunFam S-receptor-like serine/threonine-protein kinase 294 399 - -
Viun10g00046 615 Pfam Protein kinase domain 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00046 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Viun10g00046 615 Gene3D Phosphorylase Kinase; domain 1 299 399 - -
Viun10g00046 615 Pfam S-locus glycoprotein domain 52 128 IPR000858 GO:0048544
Viun10g00046 615 SUPERFAMILY Protein kinase-like (PK-like) 308 607 IPR011009 -
Viun10g00046 615 ProSiteProfiles PAN/Apple domain profile. 147 229 IPR003609 -
Viun10g00046 615 Gene3D Hepatocyte Growth Factor 157 225 - -
Viun10g00046 615 SMART serkin_6 324 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00046 615 Gene3D Transferase(Phosphotransferase) domain 1 400 615 - -
Viun10g00046 615 CDD STKc_IRAK 330 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00046 Viun-Chr10 268455 270968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00046 314 609 Trihelix Transcription Factor Family AT5G38560 44.667 6.74e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun10g00046 Pkinase 3.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00046 - - vun:114167186 1239.56