Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00042 ATGGATCACAAAAAGGTGTTGGAGGAGCTTCTGAGAGGTTATGATTCTGCAACTCAACTTCGAGTAGTGATGAATGAAAAAGATGAGTCAGAAACAAGAACACCATTTGTTCAAAATCTTGCCAAGAACGTGCTTAGATCCTTCACCAACACCCTCTTCCTCTTGGACAAGTATCACTCTCATCATCATCTTGTCTCTCCCACCAAATCTGAGGACTCCCAAGAAAGTTGCAAGAGTTTCACCACCAGTTTCAAGAACAGAAGAGGGTGCTACAAGAGAAAAAGAACTACACAAGAATGGGAGAAAGTTTCACAAGCTCCAACAGTTGATGGACACCACTGGAGAAAATATGGCCAAAAAGAGATCCTCAAAGCCAAATACTCAAGGCACTATTACAGGTGCACTCACAAGTATGATCAGAATTGTGAAGCAACAAAACAAGTGCAAAGAATTCAAGAGGATCCTCCATTGTACAAGACCACATATTTTGGCCACCACACATGCAATGACTTGTTAAGTTCTGAAATCATACTTGATTCCAATGATTCTCTTTCTGACACTTCCATTTTGCTTAGTTTTAACAACAGCTTCCCTGCTCCAACCAAGCAAGAGTGTCCATTTTTATCATCTCTTAATCCTTCACCATCACTGATCAAAGAGGAGAGAATTCCATCATGTTACTCTGATGAACACATGCTATCCCCAGAACCCACTTTGGATCATTCTTCAAGGCACAATAATAATAATGTCACTACTCTACCACTCGATCACTGGGATGTTATGTCTTCTGCCTTGTGTGATTCTGTTGACCTTGATGATATCAGCCTTTTGTTGGATTTTGATGATTGA 849 0.404 MDHKKVLEELLRGYDSATQLRVVMNEKDESETRTPFVQNLAKNVLRSFTNTLFLLDKYHSHHHLVSPTKSEDSQESCKSFTTSFKNRRGCYKRKRTTQEWEKVSQAPTVDGHHWRKYGQKEILKAKYSRHYYRCTHKYDQNCEATKQVQRIQEDPPLYKTTYFGHHTCNDLLSSEIILDSNDSLSDTSILLSFNNSFPAPTKQECPFLSSLNPSPSLIKEERIPSCYSDEHMLSPEPTLDHSSRHNNNNVTTLPLDHWDVMSSALCDSVDLDDISLLLDFDD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00042 282 SUPERFAMILY WRKY DNA-binding domain 105 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g00042 282 SMART WRKY_cls 108 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g00042 282 Gene3D WRKY domain 93 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g00042 282 ProSiteProfiles WRKY domain profile. 103 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g00042 282 Pfam WRKY DNA -binding domain 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g00042 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 195 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00042 Viun-Chr10 250663 252217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00042 5 182 WRKY Transcription Factor Family AT3G56400 36.634 3.54e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun10g00042 WRKY 5.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00042 - - var:108346831 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01156 5 8107601 8109548 Viun10g00042 10 250663 252217 PCT