Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00041 ATGGAACATAATGCCTCAAACATTCCCCCCTCTGAAACTTCCCATTCTCGCCGCAATAGGGTTCGTCCCAAAAGCAGCGTGCAATTTGATGATAAAACCGTCTTACATGATGACAATGCCAACGTCATCTATGTTAATGATCCCACCAAGACTAATGAAAAGTATGAGTTTTGTGGGAATGACATCCGAACCAGCAGATACACTCTTATCAACTTCTTGCCCAAGAATTTGTTCATCCAGTTCCACAGGGTTGCTTATCTCTATTTCCTTGCCATTGCTGCCCTGAATCAGCTTCCTCCACTAGCTGTTTTCGGCCGAACCGTGTCCCTTTTCCCCCTATTGTTTGTGCTTTGCGTCACTGCTGTCAAGGATGCTTATGAGGATTGGCGCCGGCACAGGTCAGATTGCTATGAGAACAATCGTGAGTGTCTTGTTCTTCAATCGGCTCAGTTCCGTTCCAAGAGATGGAAAAATGTGCAGGCCGGTGATGTGATTAAAATCATAGCCGATGAGATGATTCCTGCTGACATGGTCTTGCTGGGGACAAGCGATCCTAGTGGGGTTGCTTATATTCAGACTATGAATTTGGATGGTGAATCGAATTTGAAGACACGGTTTGCCAAGCAAGAAACAGTTTCAGCGTTGTTGCAAGATGCTTGTGCTGTCTCTGGAGTTATTAGATGTGAACCACCTAATCGGAATATATATGAGTTCACGGCCACCATGGAGTTCAATGACCATAAGATTCCTCTTAACCAGTCAAACATTGTACTGCGTGGTTGCGTGCTGAAGAACACGGATTGGGTAATTGGTGTTGTGGTCTATGCAGGACAGCAAACAAAAGCAATGTTGAACAGTGCAGCTTCCCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAACAGAGAAACTTTGTGGTTGTCAGTTTTTCTTTTTATCATGTGCGCAGTTGTTGCCCTTGGGATGGGTCTCTGGCTGGTACGCCATGCCCACGAGCTTGATACCTTGCCTTACTACAGAAAAAAATTCTTCAACAAAGGGCCAAATGAGGGAAGGAAATACAGGTACTATGGGATAACAATGGAAACATTCTTCTCCTTTTTGAGCTCTATTATTGTGTTTCAGATAATGATACCAATATCTCTATATATCACAATGGAGTTAGTTCGATTGGGTCAGTCATACTTCATGGTAGAGGACAGAGATATGTATGATTCTAAATCTGAATCAAGGTTCCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTACGTGTTTTCTGACAAGACAGGAACTCTAACAGAAAACAAAATGGAGTTTCAGAGAGCCAGTATACATGGAAAGAGCTACGGGAGCTCCTTGCATACAGATGATAAAAGTACAGAAGCAGCAGCAGCCAACAACAGTAAACGAAAATGGAAACTCAAATCTGAAACTGCTGTTGATTCTGAACTAATGACATTGTTGCGGAAAGACTCAAATTTAGATGAAAGAATTGTTGCTCATGAGTTTTTCCTCACATTGGCTGCTTGTAATACTGTGATCCCCATTATCAGTAGTGGTAAAGTTTCCAGTGGTGGAAAAGATGAACCAAATCATGACATAGAAGGTATTGATTACCAGGGAGAGTCTCCTGATGAACAAGCTCTAGTTTCAGCTGCATCTGCATATGGATATACTCTATTTGAGCGAACATCTGGAAATGTTGTTATTGATGTAAATGGTGAGAAACTCAGGTTGGATGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCAGTTATTCTTCGGTTTCCTGATAATGTTGTTAAGGTGTTGGTTAAAGGCGCTGACACTTCAATGTTAAGCATTTTAGCTCCTGCCACTGAAGGAAACAATGGAATACAGTATGAAACTCAGAGTCATTTAAGTGAATATTCTATGGAAGGTTTACGAACTCTTGTAGTTGGCTCCAGGGATCTTTCAGATGCTGAATTTGTGGAGTGGCAAAACATGTATGAAGATGCAAGCACTTCATTGACTGATCGAGCTGCAAAACTACGTCAAACAGCGGCTCTAATAGAATGCAACCTAAAGCTTCTCGGAGCAACTGGAATTGAGGACAAGCTGCAGGAGGGTGTGCCAGAAGCCATTGAGTCCATGCGGCAAGCTGGAATAAAGGTCTGGGTTCTTACTGGTGATAAGCAGGAGACTGCAATTTCAATTGGTCTTTCTTGTAAACTTCTGAGTAGAGACATGCAGCAGATAATTATAAATGGCACTTCAGAGGTTGAGTGCAGAAAGCTCTTGACTGATGCTATAGCTAAGTATGGGTTGAAATCTTCAAGTAGAGAACATCAGAATCTGAAGTGCAAAACTGATTCTAGACACGGTTGCCCTGATATTCACAATGATACAAAATCATTGGGCTTGCTCAAGTCAAATGCAGGAAAGAAAGAAGGAACTACTGCTCCATCGGCACTCATAATTGATGGAACCAGTTTAGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCAAACTTGCAACTTCCTGTAGCGTTGTGCTATGCTGCCGCGTTGCACCCTTGCAGAAAGCAGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATCTGACATTAGCTATTGGTGATGGGGCAAATGATGTGTCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGACGCCAAGCTGTGATGGCATCAGACTTTGCCATGGCACAATTCCAGTTCTTGAAAAGATTGCTTCTGGTTCACGGACACTGGAATTATCAGCGTATTGGTTATCTTGTTCTGTACAACTTTTACCGCAATGCTGTCTTTGTGTTGATGCTATTCTGGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTGACAGAGTGGAGTAGTGTACTTTATTCTGTTATATACACATCGATCCCCACTATCATTGTTGGTGTGTTGGACAAAGACTTGAATCATAGTACACTCTTGCAGTATCCAAAATTATATGGTACAGGTCACAGGCATGAGGCTTACAATTTGCAATTATTTTGGATTACAATGATTGACACACTATGGCAGAGTCTTGCTCTCTTCTACATTCCCGTATTGATCTATAAGGACAGCACAATTGATATATGGAGCATGGGCAGTTTATGGACAATTTCAGTTGTTATCCTTGTAAATGTACACCTGGCTATGGATATTAACCAGTGGGTAGTGGTTAGTCATGTTGCTGTATGGGGATCAATAATCATTACATATGGCTGCGTGGTGATATTGGATTCTATACCTGCCTTTCCCAATTATGGGACTATTCATCATTTGGCAATTTCCCCTACATATTGGATGACAATTTTTCTCATCATAATCGTGGCATTGCTACCTCGCTTTTCTTGCAAAGCTTTTTATCAAGTCTTTTGTCCTTCAGATATCCAGATAGCCAGAGAAGCTGAGACAATGAGAAAACAGCATGATAATTTGCAATCAAAGTGCCCAGTTTCCAAATAA 3540 0.4155 MEHNASNIPPSETSHSRRNRVRPKSSVQFDDKTVLHDDNANVIYVNDPTKTNEKYEFCGNDIRTSRYTLINFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAVKDAYEDWRRHRSDCYENNRECLVLQSAQFRSKRWKNVQAGDVIKIIADEMIPADMVLLGTSDPSGVAYIQTMNLDGESNLKTRFAKQETVSALLQDACAVSGVIRCEPPNRNIYEFTATMEFNDHKIPLNQSNIVLRGCVLKNTDWVIGVVVYAGQQTKAMLNSAASPSKRSKLESYMNRETLWLSVFLFIMCAVVALGMGLWLVRHAHELDTLPYYRKKFFNKGPNEGRKYRYYGITMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMVEDRDMYDSKSESRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASIHGKSYGSSLHTDDKSTEAAAANNSKRKWKLKSETAVDSELMTLLRKDSNLDERIVAHEFFLTLAACNTVIPIISSGKVSSGGKDEPNHDIEGIDYQGESPDEQALVSAASAYGYTLFERTSGNVVIDVNGEKLRLDVLGLHEFDSVRKRMSVILRFPDNVVKVLVKGADTSMLSILAPATEGNNGIQYETQSHLSEYSMEGLRTLVVGSRDLSDAEFVEWQNMYEDASTSLTDRAAKLRQTAALIECNLKLLGATGIEDKLQEGVPEAIESMRQAGIKVWVLTGDKQETAISIGLSCKLLSRDMQQIIINGTSEVECRKLLTDAIAKYGLKSSSREHQNLKCKTDSRHGCPDIHNDTKSLGLLKSNAGKKEGTTAPSALIIDGTSLVYILEKELESELFKLATSCSVVLCCRVAPLQKAGIVDLIKSRTDDLTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMAQFQFLKRLLLVHGHWNYQRIGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTEWSSVLYSVIYTSIPTIIVGVLDKDLNHSTLLQYPKLYGTGHRHEAYNLQLFWITMIDTLWQSLALFYIPVLIYKDSTIDIWSMGSLWTISVVILVNVHLAMDINQWVVVSHVAVWGSIIITYGCVVILDSIPAFPNYGTIHHLAISPTYWMTIFLIIIVALLPRFSCKAFYQVFCPSDIQIAREAETMRKQHDNLQSKCPVSK 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00041 1179 NCBIfam phospholipid-translocating P-type ATPase 57 1160 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Viun10g00041 1179 Pfam Phospholipid-translocating ATPase N-terminal 43 108 IPR032631 -
Viun10g00041 1179 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1165 - -
Viun10g00041 1179 FunFam Phospholipid-transporting ATPase 115 285 - -
Viun10g00041 1179 Gene3D - 412 426 - -
Viun10g00041 1179 Pfam Phospholipid-translocating P-type ATPase C-terminal 913 1153 IPR032630 -
Viun10g00041 1179 SFLD Haloacid Dehalogenase 414 936 - -
Viun10g00041 1179 SUPERFAMILY Calcium ATPase, transduction domain A 140 282 IPR008250 -
Viun10g00041 1179 Gene3D - 698 925 IPR023214 -
Viun10g00041 1179 PRINTS P-type cation-transporting ATPase superfamily signature 430 444 - -
Viun10g00041 1179 PRINTS P-type cation-transporting ATPase superfamily signature 885 904 - -
Viun10g00041 1179 Pfam E1-E2 ATPase 141 388 - -
Viun10g00041 1179 NCBIfam HAD-IC family P-type ATPase 362 454 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g00041 1179 NCBIfam HAD-IC family P-type ATPase 855 971 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g00041 1179 SFLD p-type atpase 414 936 IPR044492 -
Viun10g00041 1179 CDD P-type_ATPase_APLT_Dnf-like 59 1045 - -
Viun10g00041 1179 Gene3D - 427 439 IPR023214 -
Viun10g00041 1179 ProSitePatterns E1-E2 ATPases phosphorylation site. 432 438 IPR018303 -
Viun10g00041 1179 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 436 714 IPR023299 GO:0000166
Viun10g00041 1179 SUPERFAMILY HAD-like 691 933 IPR036412 -
Viun10g00041 1179 MobiDBLite consensus disorder prediction 1 27 - -
Viun10g00041 1179 Gene3D - 118 286 - -
Viun10g00041 1179 FunFam Phospholipid-transporting ATPase 544 688 - -
Viun10g00041 1179 Gene3D - 545 681 IPR023299 GO:0000166
Viun10g00041 1179 MobiDBLite consensus disorder prediction 453 472 - -
Viun10g00041 1179 Pfam Cation transport ATPase (P-type) 535 622 - -
Viun10g00041 1179 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1152 IPR023298 -
Viun10g00041 1179 Gene3D - 440 477 IPR023299 GO:0000166
Viun10g00041 1179 MobiDBLite consensus disorder prediction 453 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00041 Viun-Chr10 239240 246331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00041 35 1164 Primary Pumps ATPases AT5G04930 56.460 0.0 1309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00041 K14802 - gmx:100788740 2017.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01155 5 8087251 8093274 Viun10g00041 10 239240 246331 PCT