Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00040 ATGGCTTCTCTGCTCCCTCCAACTCCAACTGCAACTTCCACGCTCAAACACAGCCAAATGGCCTCTCCCATGAAGCTCACCAACTGCTACTTCCACCGTTTGAAGAGCAATTCTGCAAAGTGCCATGCAGTGTTTGGTGATGTGGCCAAAAGGTTGGTGGAGAACAGTGTTGGCATGGAGCAGTTTGAAAGTATCCAATCGGGAATAGTGCAGATTGAAAGAGTGACTGAAGGGTTATCTGATGTGCAGAAGTGGGTGGTTCTGGTGTTTGGTGGGTTGACGTGGATTTATCTGACTGCGAGGCCAGGTGTGCTTGTTGGTGCCATTGATGCATACCTTTTGGCCCCTCTTCAACTGGGGTTGGACAGTTTGGTTGGAAGGAGGAACTTGAAGAGGAGTGACTTTGTGGTCGGAGAAAAGCTTGGTGAAGGGTCTTTTGGTGTTGTCTATTCGGGTGTTTTGGTTCCGAAGAATGGGAATGGGAGTAATGGGAGTGTTGATGTTGTGCAGAAGAGGGGGAGAGGCAAGACAACGCAGGTGGAAGCCAAGTCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTCGAAATTAAAGGCGCTGCGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGGGCAGCTCCTGAAACATGTGCTGACTTTCTTGGAAGTTTTGTAGCTGATCAAACAAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGGGATCGCACTCTTGGTGATTACATGAAGGACAGAAACTTTCCTTCAAACTTAGAATCTGTGATGTTTGGACGTGTTCTGCAAGGTGTTGACTCTTCAAAACGAAATGCATTGATCATCAAACAAATAATGCGCCAGATCATAACATCTCTGAGGAAAATTCATGATACTGGCATTGTTCACAGGGATGTAAAGCCAGCCAACATAGTGGTCACTAAACGAGGCCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACTTGCGGATTGGAAAGAATTATGTTCCGAACCGTACCCTTTTGGATCCTGACTACTGCCCCCCAGAATTATATGTACTCCCAGAAGAAACACCAAGTCCACCACCAGCACCAATTGCTGCTTTCCTTTCTCCAATCCTTTGGCAGTTAAACAGCCCTGATTTGTTTGATATGTATTCAGCTGGGATTGTACTCCTTCAAATGGCAATACCATCCTTAAGGTCTTCTGCTGCTTTGAAGAATTTCAACTTGGAACTAAAAAACTGTGGATATGATCTGAAAAAATGGAGGGACTATACTCGCAGCCGGCCTGACTTCCAAATTCTAGATGGTGAATCTGGTAGAGGGTGGGACTTAGCTACAAGGCTTGTATCTGAGAGAGGTTCCCTGAGAAGAGGACGTTTATCTGCTGCTGCAGCTCTTAGACATCCTTATTTTCTTCTGGGTGGTGATCAAGCAGCTGCAGTACTTTCAAAACTAAGCTTAAGCAGAAATTGA 1506 0.4489 MASLLPPTPTATSTLKHSQMASPMKLTNCYFHRLKSNSAKCHAVFGDVAKRLVENSVGMEQFESIQSGIVQIERVTEGLSDVQKWVVLVFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDSLVGRRNLKRSDFVVGEKLGEGSFGVVYSGVLVPKNGNGSNGSVDVVQKRGRGKTTQVEAKSKDKVILKKVKVEIKGAAEFGDYEEWFNYRLSRAAPETCADFLGSFVADQTNSQFTKGGKWLVWKFEGDRTLGDYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLRKIHDTGIVHRDVKPANIVVTKRGQIKLIDFGAATDLRIGKNYVPNRTLLDPDYCPPELYVLPEETPSPPPAPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSSAALKNFNLELKNCGYDLKKWRDYTRSRPDFQILDGESGRGWDLATRLVSERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00040 501 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 47 500 - -
Viun10g00040 501 CDD STKc_SNT7_plant 139 482 - -
Viun10g00040 501 SMART serkin_6 135 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00040 501 Gene3D Transferase(Phosphotransferase) domain 1 280 484 - -
Viun10g00040 501 Gene3D Phosphorylase Kinase; domain 1 174 249 - -
Viun10g00040 501 Pfam Protein kinase domain 289 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00040 501 SUPERFAMILY Protein kinase-like (PK-like) 131 483 IPR011009 -
Viun10g00040 501 ProSiteProfiles Protein kinase domain profile. 135 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00040 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00040 Viun-Chr10 234525 237921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00040 159 336 MAP Kinase Kinase Gene Family AT4G29810 24.862 8.43e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Viun10g00040 Pkinase 5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00040 - - gmx:100788727 772.311