Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium99g00003 TTAATCTTTGCAGTAACTCTGGCAAATCCTTGGTGGACAGGTCAGGGAGGGTTATCTGGGGTTGACCCAGGAACCCATTCGCCTGGCCTAAGCAAACGCCACACAGACCTTGCAATCAATGAAACCAGTGGTGGCCATAATATAGAAGAAGATGAAGACAATAGAGATGAACCGAGAGAAGGTGCAGTTGAGGTTGGAACTCGCAGACCGAGAGGAAGACCTCCCGGATCCAAAAACAAGCCAAAACCGCCAATTTTCGTAACAAGGGACAGCCCAAACGCCCTGAGGAGTCATGTGATGGAGATAACTGGAGGAGCTGATGTTGCCGAAAGTGTGGCCCAATTCGCAAGAAGGCGTCAGCGTGGGGTTTGTGTGCTCAGTGGGAGTGGCTCCGTGGCCAATGTCACTCTTAGACAACCTGCTGCTCCTGGAGCTGTGGTGGCACTTCATGGGAGGTTTGAGATTTTGTCCCTCACTGGGACTTTTTTACCTGGTCCTGCTCCTCCAGGATCCACAGGACTCACAGTGTATCTTGCTGGAGGCCAGGGCCAAGTACTAGGAGGGAGTGTTGTTGGGCCTCTAGTTGCCACAGGACCAGTGATGGTGATTGCTGCAACTTTTTCTAATGCAACATATGAGAGACTTCCACTTGATGAAGATGAAGAAGGGCCTAGTTCCGCCGCCGCGGTACAAGGAGGAGGATCGCCACCGCCACTTGGAATTGGAAGCGGTGGGGGTGGGCAATTGCAGGGTGGGATTCCAGATCCATCATCTTTGCCTTTGTATAATCTTCCACCGAATGGAGGAGGGGGGCAAGTGGGGCATGAAGCCCTTGCTTGGGCTCATGGACGGACACCTTTCTGA 864 0.5266 LIFAVTLANPWWTGQGGLSGVDPGTHSPGLSKRHTDLAINETSGGHNIEEDEDNRDEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVLGGSVVGPLVATGPVMVIAATFSNATYERLPLDEDEEGPSSAAAVQGGGSPPPLGIGSGGGGQLQGGIPDPSSLPLYNLPPNGGGGQVGHEALAWAHGRTPF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium99g00003 287 FunFam AT-hook motif nuclear-localized protein 95 222 - -
Vium99g00003 287 CDD DUF296 96 207 IPR005175 -
Vium99g00003 287 MobiDBLite consensus disorder prediction 39 92 - -
Vium99g00003 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 209 IPR005175 -
Vium99g00003 287 MobiDBLite consensus disorder prediction 217 273 - -
Vium99g00003 287 MobiDBLite consensus disorder prediction 13 32 - -
Vium99g00003 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 282 IPR014476 GO:0003680
Vium99g00003 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 220 - -
Vium99g00003 287 ProSiteProfiles PPC domain profile profile. 92 229 IPR005175 -
Vium99g00003 287 Gene3D - 95 223 - -
Vium99g00003 287 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium99g00003 Vium-Chr99 41220 42390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium99g00003 7 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 61.301 1.59e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium99g00003 - - var:108341460 490.73