Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium99g00002 ATGTTAAAAGCAGTGGCATCTGGGCTGTTGATTACCTCTGTCCTCATATGCGTATCTGCTAATGATAATGGATTTCCTAGATGTAACTGCGATGATGAGGCCAGCTTCTGGACTATTGAAAGCATTCTGGAGTGTCAGAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTGCTTTATTTTATCAGTTGCTCAAACGTCCCATTCAAATGGGTCCTGATTCAGTTCATTGCCTTCATTGTACTATGTGGGTTAACACATTTGCTCAATGGGTGGACCTATGGTCCTCACACTTTCCAACTTATGGTGGCACTTACTGTCTCTAAAATTCTCACTGCATTGGTGTCATGTGCCACCGCCATAACCCTCATTACTCTGATTCCTTTGCTTCTCAAAGTGAAGGTCAGAGAGTTCATGCTGAAGAAGAAGACATGGGATCTTGGACGTGAGTTTGATAATATTATGAGGCAAAGGGAGGCTGCAGTGCATGTAAGAATGCTTACTCAGGAGATACGCAAGTCACTGGATAGACACACTATTCTGTATACCACTTTGGTGGAGCTGTCTAAAACACTGAGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGTTGATAAAACTGAGATGAACCTTACTCATGAATTAAATGGAAGGAATTTCAATTTGTCTATACCCATTAATGATCCGGATGTTGTGAGAATTAAGGGAAGCGACCGGGTGAATATACTTAGCCCCGACTCAGCACTTGCTGTTGGAAGTAGTGGAGCTTCTGGAGAGGCAGGACCAGTTGCGGCAATCCGAATGCCTATGCTACGTGTTTGTAATTTCAAAGGAGGTACACCTGAACTAAGACAGACTTGTTATGCAATATTGGTCTTAATTCTTCCTACTGGAGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTTGCAGTGGCTCTATCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGAGGAACAAAATCGAGCTTTGCAACAGGCTAAAAGGAATGCTATGATGGCAAGCCAGGCAAGAAATGCATTTCAGAAAGTCATGAGTGATGGAATGAGAAGGCCAATGCACTCAATTTTGGGATTGCTTTCAATGATACAAGATGATAATTTGAAGAATGAACAGAAACTTATCGTGGATGCAATGCTTAGGACCAGCAATGTCCTATCAAACTTGATAAACGATGCCATGGACAACTCAACTAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCATGCTGAAGGAAGCAGCTTGCCTTTCAAAATGCATGTGTGTTTATGGGGGCTTTGGTTTTATGGTTGAGGTTGAGAAGTCTCTGCCAGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTCTACATATGGTTGGGAATCTACTACAGCACAACCACGGGGGAGGGATCCTAGTATTTCGGGTTTTTGCAGAAACTGGAAGTCAGGGAAGAAGTGACAAAGGGTGGACAGCCTGGAGACCAAGCTCTTCTAGTGGTGATGTAAATATTAGATTTGAGGTAGGGATCAACAGTAGTGATTCTGAAGTGGGGAGTTCGTCAGGACTTGGGGGTAGGAATTATAACAGTGATAGAGTTGGCGGCAGATTGAGCTTCAATATTTGCAAGAGGGTAGTGCAGTTGATGCAGGGGAACATATGGTTAGTACCTTGTGCTCATGGTTATCCTCAAAGCATGACACTTCTTCTTCGGTTTCAATTACGACCATCCATTACCATAGCCATCTCTGAGCCTGGAGAAGGTTCAGAGCGTACCGATTCGAATTCAATGCTGAGAAGTCTGCAAGTTCTTTTAGTGGACAATGATGATGTAAATAGAGCAGTGACCCAAAAATTGCTTCAGAAACTAGGTTGTGTTGTAACTCCAGTTACTTCAGGATTTGAATGCCTTACTGTCATTGGACCTGCCGGATCTTCCATTCAAGTCATTCTTTTAGATCTTCACATGCCTGATTTAGATGGCTTTGAAGTTGCCACGAGGATTCGGAAGTTTAGAAGTGGAAATCGGCCAATGATCGTAGCCTTGACTGCAAGTGCAGAAGAAGATTTGTGGGACAGATGCATGCAAGTTGGTATCAATGGAGTTATCCGAAAACCAGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATCCTGATGCAGGGAAATAATATCCTGTGA 2274 0.431 MLKAVASGLLITSVLICVSANDNGFPRCNCDDEASFWTIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVSKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREFDNIMRQREAAVHVRMLTQEIRKSLDRHTILYTTLVELSKTLSLQNCAVWMPNVDKTEMNLTHELNGRNFNLSIPINDPDVVRIKGSDRVNILSPDSALAVGSSGASGEAGPVAAIRMPMLRVCNFKGGTPELRQTCYAILVLILPTGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRNAMMASQARNAFQKVMSDGMRRPMHSILGLLSMIQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDNSTKDDGRFPLEIRSFGLHSMLKEAACLSKCMCVYGGFGFMVEVEKSLPDNVMGDERRVFQVILHMVGNLLQHNHGGGILVFRVFAETGSQGRSDKGWTAWRPSSSSGDVNIRFEVGINSSDSEVGSSSGLGGRNYNSDRVGGRLSFNICKRVVQLMQGNIWLVPCAHGYPQSMTLLLRFQLRPSITIAISEPGEGSERTDSNSMLRSLQVLLVDNDDVNRAVTQKLLQKLGCVVTPVTSGFECLTVIGPAGSSIQVILLDLHMPDLDGFEVATRIRKFRSGNRPMIVALTASAEEDLWDRCMQVGINGVIRKPVLLQGIASELRRILMQGNNIL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium99g00002 757 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 752 - -
Vium99g00002 757 FunFam Ethylene receptor 629 753 - -
Vium99g00002 757 SMART gaf_1 182 338 IPR003018 GO:0005515
Vium99g00002 757 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 588 IPR036890 -
Vium99g00002 757 CDD HATPase_ETR2_ERS2-EIN4-like 470 600 - -
Vium99g00002 757 Gene3D - 428 604 IPR036890 -
Vium99g00002 757 SUPERFAMILY GAF domain-like 185 331 - -
Vium99g00002 757 FunFam Ethylene receptor 4 331 425 - -
Vium99g00002 757 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vium99g00002 757 CDD REC_ETR-like 631 746 - -
Vium99g00002 757 PIRSF Ethylen_sen_hybr_HK 1 757 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vium99g00002 757 SMART REC_2 631 750 IPR001789 GO:0000160
Vium99g00002 757 Gene3D - 161 329 IPR029016 -
Vium99g00002 757 Pfam His Kinase A (phospho-acceptor) domain 365 429 IPR003661 GO:0000155|GO:0007165
Vium99g00002 757 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vium99g00002 757 Coils Coil 334 364 - -
Vium99g00002 757 Gene3D - 330 427 - -
Vium99g00002 757 Gene3D - 617 754 - -
Vium99g00002 757 ProSiteProfiles Response regulatory domain profile. 632 750 IPR001789 GO:0000160
Vium99g00002 757 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 612 IPR003594 -
Vium99g00002 757 ProSiteProfiles Histidine kinase domain profile. 371 583 IPR005467 -
Vium99g00002 757 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Vium99g00002 757 Pfam Response regulator receiver domain 633 740 IPR001789 GO:0000160
Vium99g00002 757 SUPERFAMILY CheY-like 629 750 IPR011006 -
Vium99g00002 757 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium99g00002 Vium-Chr99 10266 13803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium99g00002 20 750 Miscellaneous Gene Families AT3G04580 58.043 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium99g00002 GAF 7.3e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium99g00002 K14509 - gmx:100787425 1376.3