Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium999g00002 ATGATGAGTTTCTGTTCTGATCACACCAAGGGTGTTTCCAATGAACATGTTTCCTCTGCAGTTGGAAATGACTCTTCTGAGAACAAAAGGCTCAAATTCATGGCCTTTTTGAGAAAAACCATGTGGAACTTTGCCTTGGCGTGTGTTGGTGTTGGTCCTTGTGGTGGCAGCAACGACCATAACGGTCAAAGGAAGAAAACTTCGGAGCATAACAAGGCGTGGTTGCTGGCGGAGTCTGGAGCAGAATTGGCTACTGCTGACCCTCAATCGGTTCACTCATCTTTCAGGTTCAGTTTCTGCTCTCAGGTTGAGGTTGAGTCCTTCAACATGAGCTCTTCTGCTTCTGCTGCTGCCGCTGCAACCTTTTTGATGGTAAATTTGGAATGTGAATCTCAAGTTAAGGAGATGAAATGGAGAATACATTCGCTGGAGAAAAGCATGTCTCCAGTCTTCAACCCTTTGATCAGGTTCAGCTATGATGAAATTCTGTCAGCCACTCACAATTTCTCCAAAGGGAGAGTGTTGGGGAGAGGTGCCTTGAGCTGTGTTTATAGAGGAAGAGTTGGGTTTTGGAGAACTGCTGTTGCTATTAAAAGGTTGGACAAGGAAGACAAGGAGTGTGCTAAGGCGTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAACACAAATGTTGTTCCTCTTGTGGGGTTTTGTATTGACTCAGAAGAGGGTTTGTTTTTGGTATACAAGTATGTGTCTGGGGGCAGCTTAGAGCATCACTTGCATGGGAAGAAGAAAAATGTGAAGGGTAGTTCACCACTTCCATGGTCTGTGAGATATCAAGTTGCAATTGGGATTGCAGAAGCCGTGGCTTATCTGCATAATGGAACAGAAAGATGTGTTGTTCATAGAGACATTAAGCCTTCAAACATTCTGCTCTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGATTAGCTTCATGGACTTCTGCCCCATCAGTTCCTTTTCTTTGCAAAACAGTGAAAGGAACATTTGGTTATTTGGCTCCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTATGGGAGTTGTTTTATTGGAACTCTTAACTGGCCGCAAGCCAATTGAAGCAAAAAGACCCCCAGGAGAGGAAAACTTGGTGATATGGGCTAAACCTTTGCTCAGGAAAGGGAAAGGAGCGATTCAAGAGTTGCTTGATCCTCAAGTCAAGTACAATTCGAGTTACACAGATCAGATGGCTCGAATGGTCGATGCAGCAGCTGCCTGTGTTACAAATGAAGAATCTAGGAGGCCAAGCATAGGTGAGATTGTTGCAATACTGAAAGGTGAAGTTGAACCTGTGCTCTCTAGAAGAAGGAAGTCTGGTTATCTTGGTAATGGATTTGTGATTGATTATTACCCTCAGTTACAACAAACAAACAATGAGATGAAAAGTCACTTGGCCTTGGCAATGCTAGGAGTTCCAGAGTGTGAGGATGAGGATTTTCTCTACGATCGTTGA 1527 0.4322 MMSFCSDHTKGVSNEHVSSAVGNDSSENKRLKFMAFLRKTMWNFALACVGVGPCGGSNDHNGQRKKTSEHNKAWLLAESGAELATADPQSVHSSFRFSFCSQVEVESFNMSSSASAAAAATFLMVNLECESQVKEMKWRIHSLEKSMSPVFNPLIRFSYDEILSATHNFSKGRVLGRGALSCVYRGRVGFWRTAVAIKRLDKEDKECAKAFCRELMIASSLHNTNVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGKKKNVKGSSPLPWSVRYQVAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLASWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAMGVVLLELLTGRKPIEAKRPPGEENLVIWAKPLLRKGKGAIQELLDPQVKYNSSYTDQMARMVDAAAACVTNEESRRPSIGEIVAILKGEVEPVLSRRRKSGYLGNGFVIDYYPQLQQTNNEMKSHLALAMLGVPECEDEDFLYDR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium999g00002 508 Gene3D Phosphorylase Kinase; domain 1 154 246 - -
Vium999g00002 508 MobiDBLite consensus disorder prediction 1 23 - -
Vium999g00002 508 Pfam Protein kinase domain 170 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium999g00002 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Vium999g00002 508 SMART serkin_6 169 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium999g00002 508 FunFam probable serine/threonine-protein kinase PBL7 131 246 - -
Vium999g00002 508 FunFam Putative receptor-like serine/threonine-protein kinase 247 464 - -
Vium999g00002 508 Gene3D Transferase(Phosphotransferase) domain 1 247 460 - -
Vium999g00002 508 SUPERFAMILY Protein kinase-like (PK-like) 148 450 IPR011009 -
Vium999g00002 508 ProSiteProfiles Protein kinase domain profile. 169 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium999g00002 508 PANTHER OS01G0750732 PROTEIN 78 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium999g00002 Vium-Chr999 64448 67215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium999g00002 157 452 Trihelix Transcription Factor Family AT1G70460 42.282 4.30e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium999g00002 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium999g00002 - - gmx:100802176 881.708