Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9995g00001 ATGATAAAGTTGATGAGTAACCAAATAACTATGAGAAGAAGATCTGAGTGCAGTTTATTAGTTACTGCGCTGATCTTTGTTACTTGCTATTTTTCCTTGTTCCCACTTTCTAATTCTTCATCCTTGGATGAAGAAAGACAGGCCTTGCTCAAGAGTGGTTGGTGGAATGATTACAGAAATGTTTCAAACCATTGTTATTGGGCTAGTGTTCTATGTGATGAAGCCGGAAGTGTTACTTCGATCGGCTTATCTTCTCTGCTCCCTTTCACAATTCCTCCAATGCAAGAACTGCAAAACTTGAATGTGACAGCCTTTCCCAATTTGCAGTTTCTGGATTTGAATGGAATGGGTCTGAGGGGAAGCATCCCTGCAGAAATTGGCACACTTACAAACCTCACCTATCTTGATTTGTCTGGCAATAGCCTCCAAGGTAAGCTACCATCTAAAGCCCTTTCAAATCTCACTCAACTTGTTCGTCTCGATTTTTCTGGAAATTCTCTTAGTGGTTTCATTCCAATGTCATTGGGTGAATTGAAGAACTTGGTTTATCTCAACCTTGATTCAAACCTTTTTACAGGCCATATTCCATCAGAATTAGGGAATTTGACAAATCTAACCCAATTACACCTCTCGAACAATTTTCTCTCTGGTTCAATCCCTCATACATTAGGTCTACTCAATAATTTGACAGATCTCTACCTAGAGTCTAACCAATTGCAAGGTCATATACCTGTTGAGCTACAGAATTTGTCCAGTTTGGTTGCTCTACGTCTTTCTCAAAATAATCTCTCTGGTTTAATACCTCCAAAACTTTTTCAAATGGACAAAATGCTTACTTTGTATATCTCATCGAATCAATTATCTGGTTCAATTCCATGGGAGACTATGAAATGTCCCTCCATTTCAGTGATTGGTTTAAGCCACAATAGATTAAATGGAAGCATAACTTCTCAAATTGCTTGTGTGAATGACCTTGATCTTAGCCACAATTTTTTTGTTGGTGAGATTCCATCTCTTTTGGGAATGAAATCAATACTGGATAAGTTGGATCTTAGTTATAATAATTTCTCTGGTAAACTTCGCAGGGAACTTGCCCATCTATCAAATATAAACCTTTCATACAATTCTTTTGACTTTTCACCAGATCCTGACTTCAAGTTACACTCACCAGATTATTGTTCTTTTCCAAGACACTCGCTGATCAGTAACAACCCACCAGATTTTGCTTTGTGCTTTAGTTCCCTCCAAACTAATTCTCAGACTAGTGAAGTTAATCTTAGCATTGAAATTGCTCTTCCCATCATCTTCACCCTTCTTCTTGTAATCCTTCTATCTCTATATTTAACAAGACACAAGTCTAGAATCAAATTTGATGCAAGCTTATCGAAAAATGGAGACTTGTTTTCTATATGGAATTATGATGGTAAAATTGCATTTGAAGATATCATTAAAGCAACAGAAGACTTTGACATCAAATACTGCATTGGGACTGGTGCATATGGCAGCGTTTATAGAGCCCAATTACCGACTGGAAAGATTGTTGCACTGAAGAAACTTCACCGAATTGAATCTCAAAATCCATCTTTCAATAAAAGTTTTCACAATGAGGTGAAGATGTTAACCAAAATCCGTCATAGAAACATTGTAAAGCTTCATGGCTTTTGCCTACACAATCGGTACATGTTTCTTATCTATCAATACATGGAAAGAAGTAGCTTATTTTATATGTTGAATGATGATGTGGAAGCTGGTGAGTTGAATTGGAGTGCAAGGGTGAATATCATTAAAGGAATGGCATATGCTTTGTGCTACATGCATCATGATTGTACCCCACCAATTCTTCATCGGGATGTAACAAGTAGCAATGTTCTACTAAACTCACAATTAGAGGCCTTTGTTTCAGATTTTGGCACAGCTAGACTCCTTGATCCAGATTCTTCAAATCAAACCTTGGTAGTTGGTACATATGGCTACATTGCCCCAGAGCTTGCATATACATTGATTGTCACAGAAAAATGTGATGTTTACAGTTTCGGAGTGGTAACTTTGGAAACATTAGTAGGAAGACATCCTGGAGATTTGATCTCAACCTTATCAAACTCAACTACTCAAAACATGTTATTGAAAGACATCCTAGATGCACGAATTCCTCTTCCTAACTCTCGAAAAGATGCTGAAGATATAATGCTTGCTGCAACAATAGCATTAAGATGTTTGTGTTTGAAACCAAAGTTCAGGCCATCAATGCAAGAGGTGGTTGGAGAGCTCTGTAATTTCAAATTGTTGACACCTTTTTCGTTCAGTGAGATTTTGATCCATCAGTTGATGACTCCAAAAGAACAAGATGCACAAGTCTAA 2358 0.374 MIKLMSNQITMRRRSECSLLVTALIFVTCYFSLFPLSNSSSLDEERQALLKSGWWNDYRNVSNHCYWASVLCDEAGSVTSIGLSSLLPFTIPPMQELQNLNVTAFPNLQFLDLNGMGLRGSIPAEIGTLTNLTYLDLSGNSLQGKLPSKALSNLTQLVRLDFSGNSLSGFIPMSLGELKNLVYLNLDSNLFTGHIPSELGNLTNLTQLHLSNNFLSGSIPHTLGLLNNLTDLYLESNQLQGHIPVELQNLSSLVALRLSQNNLSGLIPPKLFQMDKMLTLYISSNQLSGSIPWETMKCPSISVIGLSHNRLNGSITSQIACVNDLDLSHNFFVGEIPSLLGMKSILDKLDLSYNNFSGKLRRELAHLSNINLSYNSFDFSPDPDFKLHSPDYCSFPRHSLISNNPPDFALCFSSLQTNSQTSEVNLSIEIALPIIFTLLLVILLSLYLTRHKSRIKFDASLSKNGDLFSIWNYDGKIAFEDIIKATEDFDIKYCIGTGAYGSVYRAQLPTGKIVALKKLHRIESQNPSFNKSFHNEVKMLTKIRHRNIVKLHGFCLHNRYMFLIYQYMERSSLFYMLNDDVEAGELNWSARVNIIKGMAYALCYMHHDCTPPILHRDVTSSNVLLNSQLEAFVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLIVTEKCDVYSFGVVTLETLVGRHPGDLISTLSNSTTQNMLLKDILDARIPLPNSRKDAEDIMLAATIALRCLCLKPKFRPSMQEVVGELCNFKLLTPFSFSEILIHQLMTPKEQDAQV 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9995g00001 785 SMART LRR_typ_2 154 177 IPR003591 -
Vium9995g00001 785 SMART LRR_typ_2 250 274 IPR003591 -
Vium9995g00001 785 SMART LRR_typ_2 202 225 IPR003591 -
Vium9995g00001 785 SMART LRR_typ_2 129 153 IPR003591 -
Vium9995g00001 785 SMART LRR_typ_2 178 201 IPR003591 -
Vium9995g00001 785 SMART LRR_typ_2 364 387 IPR003591 -
Vium9995g00001 785 SMART LRR_typ_2 226 249 IPR003591 -
Vium9995g00001 785 SMART LRR_sd22_2 129 156 - -
Vium9995g00001 785 SMART LRR_sd22_2 226 252 - -
Vium9995g00001 785 Gene3D Transferase(Phosphotransferase) domain 1 568 763 - -
Vium9995g00001 785 Pfam Protein kinase domain 493 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9995g00001 785 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Vium9995g00001 785 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 94 322 - -
Vium9995g00001 785 ProSitePatterns Tyrosine protein kinases specific active-site signature. 613 625 IPR008266 GO:0004672|GO:0006468
Vium9995g00001 785 SUPERFAMILY L domain-like 102 360 - -
Vium9995g00001 785 Gene3D Ribonuclease Inhibitor 147 244 IPR032675 -
Vium9995g00001 785 PANTHER LEUCINE RICH REPEAT KINASE 2 226 761 - -
Vium9995g00001 785 Gene3D Phosphorylase Kinase; domain 1 453 567 - -
Vium9995g00001 785 FunFam MDIS1-interacting receptor like kinase 2 568 761 - -
Vium9995g00001 785 FunFam Leucine-rich repeat receptor protein kinase MSP1 451 567 - -
Vium9995g00001 785 Gene3D Ribonuclease Inhibitor 36 146 IPR032675 -
Vium9995g00001 785 Gene3D Ribonuclease Inhibitor 323 388 IPR032675 -
Vium9995g00001 785 Gene3D Ribonuclease Inhibitor 245 322 IPR032675 -
Vium9995g00001 785 SUPERFAMILY Protein kinase-like (PK-like) 472 756 IPR011009 -
Vium9995g00001 785 ProSiteProfiles Protein kinase domain profile. 489 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9995g00001 785 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9995g00001 Vium-Chr9995 8429 11168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9995g00001 111 661 Receptor kinase-like Gene Family AT4G08850 37.031 1.29e-113 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium9995g00001 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9995g00001 - - gmx:100789677 974.156