Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9978g00002 ATGAAACCTATCTTAACTCTCTCTTGCATTTTGTTTTTCTGCACTACCATTTCGGCTCGCACTTTTTCATATATCACTCCAAATTTCTCTGCCTCATATCTTCATTTCATCGATGACTTTGGTACGTTCCTGGTGTCTCCCAATAACACGTTCAAGGCTGCTATATTCAACCCCGGTGGTCAGCAAACAAGTTTCTACCTGTGTGTCATTCACGATGCGTCCAAAACTATCATTTGGTCTGCTAACCGTGATGCCCCCATCTCAGATTCTGGAAAAATGCTTTTAACTGTCAAAGGGATCACAATTGTCGACTACGATGGGAACACCAAATGGTCAACGCCATCACTCAAATCACAAGCAAATAGGCTTGTGCTGACCGAGATGGGAAATCTCGTCTTACAGGATACGTCCAATGGTTCTCTCTGGGAGAGTTTCCAAAGCCCAACCGATACAATTGTTATTGGACAGCGTTTACCTGTCGGAGCGTCTTTGTCAAGTGCAGCATCGAATTCAAACTTGTCAACAGGAGATTTCAAGCTCACGATTTCTTCCTCTGATGCAGTGCTGCAATGGTATGGACAGACCTACTGGAAACTTTCAACTGATACAAAAGTTTTTAAGAATTCAAATAATATGGTGGAATACATGGCCGTAAACAATTCAGGGTTTTATCTATTTGGAGATGGTGGAACAGCTTTTCAACTGGGATTGCCACTGGCTAATTTTCGAATTGCCACGTTGGGTTCCTCTGGGCAGTTCACTATCAACAGCTTTTCTAGCGCTGGCTTGACGCAGGAGTTTGTGGGGCCAGATGATGGTTGTCAAACTCCCTTGGCTTGCGGAAGAGCAGGGTTATGCACTAAGAGCACTGATTCCTCTTCACCTGTTTGTTCTTGTCCCCCAAACTTCCGCGTAGGCTCAGGTACTTCTGGTGGTTGTGTGCTGAGCAATGGATCCCATTCCCTGTCACTTGCTTGCGAAAATTCTTCAGTTGTTTCGTTTTCTAATATAGGGTATGTTCAATACTTTGGCACTTTTTACTCGGATCCGGTTATGTATAAAGGGGATTTATCTTCCTGTCAAAAATTTTGTTCCAATAACTGTTCCTGCTTGGGAATTTTGTATAAAAACACATCTGGTTCTTGCTACACGATTGAGAATGAGTTGGGGTCCATTCAGGCAAGTAATGGAGATAACAGAATGTTGGGGTTTATTAAAACTAACGTTGTTGAATCTAAAACTGGTACTAACGATGATAGTGGTAATAAGCAAAGTTCTCAAAATGGGGGATTTCCTGTGGCAGTAGCGGTGGTGTTACCTATTATTGGATTCATTATTTTGATGGCCATAATTTTCCTTGGGTGGAGAAGATTGATTCTTCTGTCAAAGATTAAAGAAGTGAAACTAGGGAAAAACTCACCTTCTTCAGGGGACTTGGATGCCTTCTACATTCCTGGATTACCTGCAAGGTTTGATTATGAAGAGCTTGAGGAAGCCACAGAAAACTTCAAGACTCTTATTGGGTCAGGTGGGTTTGGAACTGTGTACAAGGGTGTGCTTCCTGACAAATCTGCTGTAGCAGTAAAGAAAATAGTGAACATAGGCATTCAAGGGAAGAAAGATTTCTGCACTGAGATCGCTGTCATTGGAAACATCCACCACGTGAACTTGGTCAAACTGAAAGGCTTTTGTGCTCAAGGGAGACACCGGATGTTGGTTTATGAGTACATGAACCGTGGATCCCTAGACCGAAACCTCTTCGGTGGTGGACCCGTGTTAGAATGGCAAGAGAGGTTTGATGTGGCGCTTGGAACAGCGCGTGGACTTGCTTACCTTCACAGTGGCTGTGAGCAGAAGGTTATCCATTGTGACATCAAACCCGAGAACATTCTCTTGCAAGATCAGTTTCAGGCTAAGATATCTGATTTTGGACTCTCCAAACTCCTCAGCCCCGAACAGTCCGGTCTGTTCACAACAATGAGAGGCACACGTGGTTATCTTGCTCCAGAGTGGCTCACCAACTCTGCCATTACAGAGAAAACTGACGTGTATAGCTTTGGAATGGTGCTTCTTGAACTCGTCAGTGGAAGAAAGAACTGTTATTTCAGGTCAAGAAGCCATAGCATGGATGAAAGCAACAGTGGTGGAGGCCATTCCTCGACATCATCAACAACTGGGTTGGTTTATTTTCCTCTATTTGCATTGGAGATGCATGAACAGAAGAGTTACCTGGAGTTGGCTGATCCAAGACTAGAAGGACGTGTGACATATGAAGAACTGGAGAAAGTGATTCGCATTGCCTTATGTTGCGTTCATGAAGAACCTGTACTGAGGCCAAACATGGTGACTGTTGTTGGCATGTTGGAAGGTGGGACTCCATTGCCATATCCGAGGATAGAATCTTTGAACTTCCTGCGCTTTTATGGGCGAAGGTTTACTGAGGCTTCCACAATAGCGGAAGAAAATGAGTATGGTTCTTTGATGCATCAAGAAGCACGTAGATCTACAAGCATACCAAGTGATTCACCGTCCCATGGTTTTTCTTACATGTCTTCACAAAATATCTCAGGGCCGAGATAG 2580 0.4376 MKPILTLSCILFFCTTISARTFSYITPNFSASYLHFIDDFGTFLVSPNNTFKAAIFNPGGQQTSFYLCVIHDASKTIIWSANRDAPISDSGKMLLTVKGITIVDYDGNTKWSTPSLKSQANRLVLTEMGNLVLQDTSNGSLWESFQSPTDTIVIGQRLPVGASLSSAASNSNLSTGDFKLTISSSDAVLQWYGQTYWKLSTDTKVFKNSNNMVEYMAVNNSGFYLFGDGGTAFQLGLPLANFRIATLGSSGQFTINSFSSAGLTQEFVGPDDGCQTPLACGRAGLCTKSTDSSSPVCSCPPNFRVGSGTSGGCVLSNGSHSLSLACENSSVVSFSNIGYVQYFGTFYSDPVMYKGDLSSCQKFCSNNCSCLGILYKNTSGSCYTIENELGSIQASNGDNRMLGFIKTNVVESKTGTNDDSGNKQSSQNGGFPVAVAVVLPIIGFIILMAIIFLGWRRLILLSKIKEVKLGKNSPSSGDLDAFYIPGLPARFDYEELEEATENFKTLIGSGGFGTVYKGVLPDKSAVAVKKIVNIGIQGKKDFCTEIAVIGNIHHVNLVKLKGFCAQGRHRMLVYEYMNRGSLDRNLFGGGPVLEWQERFDVALGTARGLAYLHSGCEQKVIHCDIKPENILLQDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELVSGRKNCYFRSRSHSMDESNSGGGHSSTSSTTGLVYFPLFALEMHEQKSYLELADPRLEGRVTYEELEKVIRIALCCVHEEPVLRPNMVTVVGMLEGGTPLPYPRIESLNFLRFYGRRFTEASTIAEENEYGSLMHQEARRSTSIPSDSPSHGFSYMSSQNISGPR 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9978g00002 859 FunFam serine/threonine-protein kinase PBS1-like 472 576 - -
Vium9978g00002 859 CDD B_lectin 41 148 IPR001480 -
Vium9978g00002 859 Gene3D - 39 147 IPR036426 -
Vium9978g00002 859 Pfam D-mannose binding lectin 76 159 IPR001480 -
Vium9978g00002 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 200 IPR036426 -
Vium9978g00002 859 Gene3D Phosphorylase Kinase; domain 1 487 576 - -
Vium9978g00002 859 FunFam Serine/threonine-protein kinase 577 795 - -
Vium9978g00002 859 SUPERFAMILY Protein kinase-like (PK-like) 479 788 IPR011009 -
Vium9978g00002 859 Gene3D Transferase(Phosphotransferase) domain 1 577 793 - -
Vium9978g00002 859 MobiDBLite consensus disorder prediction 829 859 - -
Vium9978g00002 859 MobiDBLite consensus disorder prediction 828 859 - -
Vium9978g00002 859 SMART serkin_6 501 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9978g00002 859 ProSiteProfiles PAN/Apple domain profile. 326 408 IPR003609 -
Vium9978g00002 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Vium9978g00002 859 CDD STKc_IRAK 507 790 - -
Vium9978g00002 859 Pfam Protein kinase domain 504 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9978g00002 859 PIRSF SRK 1 841 IPR024171 GO:0004674
Vium9978g00002 859 ProSiteProfiles Bulb-type lectin domain profile. 29 146 IPR001480 -
Vium9978g00002 859 ProSiteProfiles Protein kinase domain profile. 501 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9978g00002 859 ProSitePatterns Protein kinases ATP-binding region signature. 507 530 IPR017441 GO:0005524
Vium9978g00002 859 SMART blect_4 35 148 IPR001480 -
Vium9978g00002 859 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9978g00002 Vium-Chr9978 30045 33134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9978g00002 484 797 Receptor kinase-like Gene Family AT5G20050 41.590 6.45e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium9978g00002 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9978g00002 - - gmx:100305399 1309.28