Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9974g00022 ATGGACTTTAGAGAAGACTTTGCCTTGCTGTCGGAACAGCGCCGGGAGTTCGCCATGGCGGAGGTCATAGAATCCGACCTGGAATTTGCCTTTGGCCTCCAATTGCAGGAGGCTCTCGAGGCCTCCCTCGCTTTGAATCCGTCTTCTTCCTCCGCTGTTATCGAACAGCCTACTGTTGACGAGCTGAACGCGACCTCAGTGCAGAGTGAGGAGTTGGAGCGTGTGGAGTGCGAGATGAAGGACAAGGAGCAGAGCGAGAGGGAAATGCAGAAGATGAGGGAGGATCTCTGTCGAAGGATCCACGACGAGAAGGTGGCGAGGGATATATTGACGATTTCTGAGGCGGATTGGCAGCAGTGGGGCGATAACTTTGAGAAGCCGTTCGGTGAGGGTTCATCATCTTCGGGTAGGACGGAGACGGAGGAAGGCTGGGTTAGGGTTTACTTGAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGGAGAAGGTTGTGTTATCTGGGATAGGGGTTGCGATTTGTGACCGTAGTGATAATTTGATATTTGAGGTTTCTAAGTCGGTGATTGAGAATGGCACTAGCAAGGTCGCTGTGGAGATTAAGGCGTTGATTGAAGCCTTCAATATGGTCCTTGCTTTGGAATTAAAGCGCATAGTTTACTATACCGATTATTATCCACTTCTCCAATATGTGAGAGGAAACTGGTCTGCAAAACAGCGGAAGATTGCCATGTTGGTTGATCAAGTTCATCTGCTTCAGAGGAAGTTTACATACTGCGATTCAAGGCTTTTGGCCAGAAATGATGTCAAGTTTGCATTTAAGCTTGCGAGGGATGCGATTGTGTCTCAGTCTATGAGACCCTCGGGACCTGGGAGTACAAGGAGTTTGAATGAAAATTGTGCTATATGTTTGGAGGATACTGCTGTCAGTCAGATTTTTTCAGTTGATGGATGTCAACACCGCTATTGCTTTTCTTGCATGAAACAACATGTTGAGGTGAAGTTGCTTCATGGAATGGTGCCTAAGTGCCCTCATGAGGGATGTAAGTATGAGCTTCTGGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGATATCATGCGTCAACGCCAAGCGGAAGCTTCAATTCCTGTTGCTGAAAAAGTTTACTGCCCTTATCCAAGATGCTCTGCATTAATGACAAAAACTGAGGTCTTTGAGTACTCGAAAAATCTTATTGGTGAATCTGAACTGTCGGGACCCAAGAAATGCTTAAAATGTCATGGCCTTTTTTGTTTTAACTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTTTATGTACAAAACGTTGAATCCCAACCCTCCTGCTGAAGATTTGAAGCTAAAGTTTCTGGCATCAAGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCCGAAGGTTGCTATCACATGACTTGCAGATGTGGTTCCGAATTTTGCTATAACTGTGGTGCTGAGTGGAAGGACAAAAAAGCAACGTGTTCTTGCCCACTCTGGGCAGAAGACAATATTTGGATGGAGGAGAGAGACTTGGACGAGACTGACGAGACCGACGATGATGATGACGTCTTTGGAGGATGGCTTTGA 1626 0.4674 MDFREDFALLSEQRREFAMAEVIESDLEFAFGLQLQEALEASLALNPSSSSAVIEQPTVDELNATSVQSEELERVECEMKDKEQSEREMQKMREDLCRRIHDEKVARDILTISEADWQQWGDNFEKPFGEGSSSSGRTETEEGWVRVYLKGLVSEENVRGEKVVLSGIGVAICDRSDNLIFEVSKSVIENGTSKVAVEIKALIEAFNMVLALELKRIVYYTDYYPLLQYVRGNWSAKQRKIAMLVDQVHLLQRKFTYCDSRLLARNDVKFAFKLARDAIVSQSMRPSGPGSTRSLNENCAICLEDTAVSQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLVDSCQKFLTQKLTDIMRQRQAEASIPVAEKVYCPYPRCSALMTKTEVFEYSKNLIGESELSGPKKCLKCHGLFCFNCKVPWHSGMTCFMYKTLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGSEFCYNCGAEWKDKKATCSCPLWAEDNIWMEERDLDETDETDDDDDVFGGWL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9974g00022 541 Pfam Reverse transcriptase-like 162 278 IPR002156 GO:0003676|GO:0004523
Vium9974g00022 541 FunFam RBR-type E3 ubiquitin transferase 145 282 - -
Vium9974g00022 541 CDD Rcat_RBR_unk 465 500 - -
Vium9974g00022 541 ProSitePatterns Zinc finger RING-type signature. 317 326 IPR017907 -
Vium9974g00022 541 SMART ibrneu5 452 509 IPR002867 GO:0008270
Vium9974g00022 541 SMART ibrneu5 366 439 IPR002867 GO:0008270
Vium9974g00022 541 SUPERFAMILY RING/U-box 298 378 - -
Vium9974g00022 541 ProSiteProfiles Zinc finger RING-type profile. 299 343 IPR001841 -
Vium9974g00022 541 FunFam RBR-type E3 ubiquitin transferase 437 538 - -
Vium9974g00022 541 Coils Coil 72 95 - -
Vium9974g00022 541 ProSiteProfiles TRIAD supradomain profile. 295 519 IPR044066 -
Vium9974g00022 541 Pfam IBR domain, a half RING-finger domain 458 507 IPR002867 GO:0008270
Vium9974g00022 541 Pfam IBR domain, a half RING-finger domain 380 439 IPR002867 GO:0008270
Vium9974g00022 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 377 IPR013083 -
Vium9974g00022 541 CDD BRcat_RBR_unk 379 442 - -
Vium9974g00022 541 Gene3D - 436 535 - -
Vium9974g00022 541 FunFam RBR-type E3 ubiquitin transferase 294 379 - -
Vium9974g00022 541 SUPERFAMILY RING/U-box 453 516 - -
Vium9974g00022 541 Gene3D - 146 284 IPR036397 GO:0003676
Vium9974g00022 541 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 518 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9974g00022 Vium-Chr9974 86720 90521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9974g00022 146 498 C3H Transcription Factor Family AT2G19610 33.148 3.03e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9974g00022 - - gmx:100790037 804.668