Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9974g00021 ATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCTCCACTTTCTCACTCCCCCACTTCCTCTTCTTCTTCACCACCACCTCCTCCACCTCCCACTGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTGGCACCGTATTTCCCTCCCACTGAACCTGCAAAGTTTACCATTGCTCACCGTGTGTTCGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTACGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGCTGTGCAGGAGCAATCTGCCAGCTCCAGAAGCAGGTGAATGAACTTCAAGCACAATTGGCCAAATCACAAGCTGAGCTTGTAACCATGCAACTTCAGCAAGCCAATCTTGTGGCTCTGATCTGCATGGAAATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTCGACAATTTCATTTCAACTCCTCCTCACACCGGTGGCTATCAAAGCGGCATGAACAACTTCTTTGAGGAGAACACTAGCCCAAACTCACTATGGGAGCCCCTTTGGACTTGA 615 0.4943 MESSDTYTPTSSAPLSHSPTSSSSSPPPPPPPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPHTGGYQSGMNNFFEENTSPNSLWEPLWT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9974g00021 204 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Vium9974g00021 204 MobiDBLite consensus disorder prediction 1 20 - -
Vium9974g00021 204 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Vium9974g00021 204 Coils Coil 117 144 - -
Vium9974g00021 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 163 - -
Vium9974g00021 204 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9974g00021 Vium-Chr9974 65363 67219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9974g00021 34 204 AS2 family AT2G28500 66.484 1.49e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium9974g00021 LOB 2.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9974g00021 - - gmx:100789504 332.028