Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9971g00001 ATGGAGTTCGCTTCTTCTTCATCATCTTCATCCTTCCTAAAATCAGAACCCCATTTCATATACGATGTATTCATTAACTTTGGGGGAGAAGACATCGGTAGGAAGTTGGTTTCTCATCTCCACTCTGTCCTTTTACAAGCTCAAGTCAAAACTTTGGTTAACGAGGAGAATCTGCAGGAGGGAATGAAGCTGGAAGAACACATGGGAGCAATAGCAGTCTCTAAGATTGCAATAATCGTTTTTTCCAAAACATACACTGAATCCACATGCTGTCTTCTTGAGCTTGAAAAGATTATTGAATGCCTCGAAACTTTTGGCCAAGTAGTTCTGTCCGTATTTTACGAGATTGAACCATTGGATGTACGTGATCAGAAAGATGATTTTGGTAAAGCGTTGGAAGAAACTGCAAAAAAAAGCTATTTAGGAGAACAACTGGAACATGCGTTGTCCAGGTGGAGACGTGCACTCACCACAGCTGCAAGTATGACTAGTTGGGATGTCAGAGATTTCAGGGATGATGCTGAACTTGTGGAGGTAATTGTTAGGCACGTTCATACATTACTGGACTATAAAGACTTGTTTATTACCGAATTTCCTGTTGGATTAGAGTCCCGCGTGGAAAAGGTTATTGGATGTATTCAAAATCATGACACCAAAGTCTGTATAATAGGGATATGGGGAATGGTAGGAACGGGTAAAACTACCATAGCCAAAGCCATCTACAATCGTATATATCGTCTATTCATTGGTAAGAGTTTTATTGAAACTATTAGAGAGTTTTGGTGTCTATTATATAGAACATATGTTGATTTGCAAGAACATCTTCTTGATGATGTCCTTAAATACAAGTTTGAGTTGGAAAACGACGAGATGGGAAGAACCATGATCAAGACTAAATTCTCCCGAAAAAAGTTACTCATTGTGCTTGATGATGTGAGTGAGTTTGGCCAACTAGAAAACCTATGCGGGAATCGCGAATGGTTTGGTAGGGGAACTGTGATAATCATTACAACTAGAGATGCTAAAATGCTAAACAGACTGAAAGTTAATTATGTTTATAAAATGGATGCTATGAACAAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTGGAGAAGCAAAACCAAGAAAAGAATTGAATGAAATTGCAAGGAACATGGTTGCTAATTGTGGAGGACTACCACTAGCCCTTAAGGTCCTCGGTGGATGGACAATGCAAATTCCCTATGTTCAAGTTCAAGAATGGAAATATGTATCGTTACGACTGCCAAATGCCTTTGCTCGAGTTAGAGAGAAATTGAAAATAAGTTTTGACGGTTTAGGTGACATGGAAAAAGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGAGAGAGGCTATGTCACAGAGATACTAAATGGCTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAACGTGACTTCATAAAAGTTGAAAGGAACAACAAACTTGAAATGCATCCTTTGTTACGAGACATGGGAAGAGAAATTACTCGTCGGGATTGGCCACAGGAACCGGGAAAAAGGAGTCGATTATGGTTTCATGAAGATGTAAAAGATATCCTGAAAACAAAGAGTGTAAGAACATTCTTTATATGA 1638 0.3834 MEFASSSSSSSFLKSEPHFIYDVFINFGGEDIGRKLVSHLHSVLLQAQVKTLVNEENLQEGMKLEEHMGAIAVSKIAIIVFSKTYTESTCCLLELEKIIECLETFGQVVLSVFYEIEPLDVRDQKDDFGKALEETAKKSYLGEQLEHALSRWRRALTTAASMTSWDVRDFRDDAELVEVIVRHVHTLLDYKDLFITEFPVGLESRVEKVIGCIQNHDTKVCIIGIWGMVGTGKTTIAKAIYNRIYRLFIGKSFIETIREFWCLLYRTYVDLQEHLLDDVLKYKFELENDEMGRTMIKTKFSRKKLLIVLDDVSEFGQLENLCGNREWFGRGTVIIITTRDAKMLNRLKVNYVYKMDAMNKNDSLELLSWHAFGEAKPRKELNEIARNMVANCGGLPLALKVLGGWTMQIPYVQVQEWKYVSLRLPNAFARVREKLKISFDGLGDMEKDIFLDVCCFFIGKERGYVTEILNGCGLHADIGITVLIERDFIKVERNNKLEMHPLLRDMGREITRRDWPQEPGKRSRLWFHEDVKDILKTKSVRTFFI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9971g00001 545 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 535 IPR044974 GO:0006952
Vium9971g00001 545 SUPERFAMILY "Winged helix" DNA-binding domain 431 536 IPR036390 -
Vium9971g00001 545 ProSiteProfiles TIR domain profile. 19 188 IPR000157 GO:0007165
Vium9971g00001 545 PRINTS Disease resistance protein signature 392 406 - -
Vium9971g00001 545 PRINTS Disease resistance protein signature 222 237 - -
Vium9971g00001 545 PRINTS Disease resistance protein signature 299 313 - -
Vium9971g00001 545 SMART till_3 20 162 IPR000157 GO:0007165
Vium9971g00001 545 Gene3D - 20 193 IPR035897 -
Vium9971g00001 545 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 163 IPR035897 -
Vium9971g00001 545 Gene3D - 194 353 IPR027417 -
Vium9971g00001 545 Pfam TIR domain 21 184 IPR000157 GO:0007165
Vium9971g00001 545 Pfam NB-ARC domain 203 434 IPR002182 GO:0043531
Vium9971g00001 545 Gene3D - 357 443 IPR042197 -
Vium9971g00001 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 452 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9971g00001 Vium-Chr9971 7 2099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9971g00001 200 538 WRKY Transcription Factor Family AT5G45050 31.412 1.43e-48 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9971g00001 - - vun:114166788 734.176