Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9956g00003 ATGCCTGTTGTGACTGAACACATGAAATGGAGAAGACCAAGAAACCAATTCGGATGCCCCATTTCAGAAACTGATCCAAACCCTCAAATCCCTTCTACAATTCAATCATCTCACACCAAATTCACCATCTCCTCTCTCTTATCTTCATTCTCCACCTCTAATGAAGCCACACATGTCAGAGACCAAAACAGCACCAAAAACAGCAAAAAATTCTCTACTGCAAGCTTCAGAGGACTCGGTTGCACTGTCAGAGCATCACAGAAGGTTTCTGTGCCCACGGTGATCCGGTCCTCGGCGGATTGGGAAGGAAAGAGGAACAGGAAGAAAAAGCACAAGAGGAACGGTAACAGTAACAGTAACAAGACATGTGATGGGGTTGTTGATGATGTTTCTGGTGGAACATGTGTGGATTTTCAGGATGTTTGGTGTGGTCCCGGTATTGGGTTCTCAACAGATGCTGCTGCTGCTGCTGCATCTGTGGACTGTGTTGTGGCTAGGAAGGATGTTTCTGCAAGAGGAAAACTTGATGTGGTGGAGAGGGAGCGTTCATCTTACTTTGGAAGGCGCATTGTAAAGCCAGAAAATTTCTCTTTTCTGGATGATGAATCTGATATCTTCACAGCACGTACTGGGTTAGACCCTTTTGGAACTGCTAGATTCTATCGCCACGTTCCACATCCTTCTCCTGATGGTCTTCCTGAGATAATGATAATCCGAGGAAGAAGAATAATAATGGGGGGTCGCTTTAACTCGCACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAGCTGGGTGAGAGAATAGGTCATGTCAGCACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGAAAAGTTAAACTTCCAAGTTCAAATGATGCATCAAAGCATCAAGAAGACAAAAAGTGCAGTGTCTGTCAGGAGGAGTATGAAGCAGGTGATGAGTTGGGGAAATTGAAGTGTGATCACAGCTATCACTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTGGTTCGACCCTAA 1086 0.4411 MPVVTEHMKWRRPRNQFGCPISETDPNPQIPSTIQSSHTKFTISSLLSSFSTSNEATHVRDQNSTKNSKKFSTASFRGLGCTVRASQKVSVPTVIRSSADWEGKRNRKKKHKRNGNSNSNKTCDGVVDDVSGGTCVDFQDVWCGPGIGFSTDAAAAAASVDCVVARKDVSARGKLDVVERERSSYFGRRIVKPENFSFLDDESDIFTARTGLDPFGTARFYRHVPHPSPDGLPEIMIIRGRRIIMGGRFNSHDQFRDWRLDVDNMSYEQLLELGERIGHVSTGLKEDEMGHNIRKVKLPSSNDASKHQEDKKCSVCQEEYEAGDELGKLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVVRP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9956g00003 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 359 IPR013083 -
Vium9956g00003 361 Pfam Ring finger domain 312 354 IPR001841 -
Vium9956g00003 361 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Vium9956g00003 361 MobiDBLite consensus disorder prediction 94 121 - -
Vium9956g00003 361 FunFam E3 ubiquitin-protein ligase rnf12-A 280 359 - -
Vium9956g00003 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 26 357 IPR045191 GO:0061630
Vium9956g00003 361 SUPERFAMILY RING/U-box 306 359 - -
Vium9956g00003 361 SMART ring_2 313 353 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9956g00003 Vium-Chr9956 33802 38591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9956g00003 4 268 C3H Transcription Factor Family AT1G73760 39.789 5.15e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9956g00003 - - gmx:100818517 558.525