Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9956g00001 ATGGATCCTCCACCTCTCTCTGCCGCAACCATCATCACTACCACCACTCTTAAAAATCATCCTGATTCGATAGAGTCTTCTTCTCCACGTTCCCGCAATGCAGAAACATGGAGTGATGAGAATTTACCGGCCGTTCCTGGGGCCAAGCTGCGCCTTATGTGCAGCTATGGTGGCCACATCATGCCACGCCCCCATGACAAGACTCTCTGCTATGTTGGCGGTGACACGAGGATTGTGGTGGTGGACCGCCACTCTTCGTTGAAAGATCTGTGTGCACGGCTTTCCCGAACCATTCTCCATGGAAGACCCTTCACACTCAAGTACCAGCTTCCCAATGAAGACCTTGATAACCTCATCACTGTCACCACTGATGAAGATCTTGACAACATGGTGGAAGAGTATGATCGAATTACGGCGAAAGGCACGGCTTCTTCACGGCTCAGGGTGTTCCTGTTCTTCACCAAACCTGAGGCCTCAGTTTCAATGGGGTCACTACTTGATGATGTGAAGTCAGAGACATGGTTTGTTGATGCACTCAACAACTCTGGAATGTTAAACAGAGTAGTTTCTGATTCTGCTGCAGGGGATTCTTTTGTGAACCTTGATGTTGGTGGTGGTGGTGTTAGTGCTAGTGGCTCAAGCAACAACTTAGAGGCTTTGCCTGATACTAGCAATAACAAGGCCAAAATCTTGCCTGATGTGGTGCAATCAAGTCCTGGTTCACCTATGATGGAGAACAGCTCCTCTTCTTCTCCTTCTTTCTCTCCTTCTTTGGCAAATCTGCCTCCCATTCGGGTACGTGTCGATGATAACAGTAGTAGGCTTCAACAAGAGAACAAGGTTGCGGGGCTGGCGGAGGAGCAGTTGGTTCAGATGACAATTGCAAGCGGGGTGAAGCAAGATGATGGGTTGGTGAGTGTGGTTTCTTCTGCAGTGGCTGCTGCACCTGCAATTCCTGCAGCTGTGACTATGCCATCTGTTGGGGTGGTTACTGCCAGTGATAATGTGATGAACAGAGTTGTTTCTGAGGACGAGAGATCTGATCTCGGATTTCGGAAGCCCCCTTTACCATTGCAGCTTGTGCAGCCAAGGACTAGTGGTGGTTTGAATTTGCCTTCTCCTGATTCAGTTGCAAGTGATAGCAGTATTGCATCTGCAAATTCTTTCTCCAAGACTGTTTACTATCAAGACCAAGTCCAAGCTGCACAACTAGACAACAAACTAGTTGCTTTACCAAATGGCAAGAGTGAAATATCTGATCAGGTGATTCAGGTCCATGGACAACAAGTTCATGATTCTGGCTACACATTACCCCCACAATTAGATCAAAATAGGCAACTTCAGCAGCAAAAGCCCTTAGTCCATGCCAGCTCTCACTACATCCACCACCCTGCAGCCACAGGGCAAATACCAGTTTCATCATACTACCAAGTTTATGCCCCACCACCACAACAACAACAACTTCACCCTCCAATTGGTCAGCAACAGTACCCAGTTTATGTGATGCCTGTTGGACCCACACAAGTAACACAACCATACAACATGGCCTTGCAGCCCAACATGGGTGACCCAAATGTGTTAATCTCAGGCAGAACCCTAATGCCACAAAGTGCTGTTACCTCAGCAGCATACAAGGATGGTACTCCACCTATCTATCCCACCAAATCAGTTAGCCCTACTATACCTGAGGTGACTCCAAGTGTTTACAAGGCTCCTCCTCCTGTGGCCTCAAACCCTGCATATGCTCCAATACCTCCCAACCAATTTCAGCCACAGTATGTGGGGTTGTCTCAGTTCCATCATCCACCACAGTCCATTGTTGTGGCTTCCTCTAGTACTACTACTAATTATGGTTATGAATATGGTGGCCATGTGCAAGACCAAGCATACTACACCCAACAACAAACCACTACTGCTCCATTGCTTCCTCAGTACCAATCCATGACCCCAGCTGCAGCAGCTGCAGCGCTGAAAGATGCTTCAAAACAGTTTCCTGCAGACACCATTCAGCAGCAAAATAGAGCATCACAGCCAGTATGA 2040 0.4789 MDPPPLSAATIITTTTLKNHPDSIESSSPRSRNAETWSDENLPAVPGAKLRLMCSYGGHIMPRPHDKTLCYVGGDTRIVVVDRHSSLKDLCARLSRTILHGRPFTLKYQLPNEDLDNLITVTTDEDLDNMVEEYDRITAKGTASSRLRVFLFFTKPEASVSMGSLLDDVKSETWFVDALNNSGMLNRVVSDSAAGDSFVNLDVGGGGVSASGSSNNLEALPDTSNNKAKILPDVVQSSPGSPMMENSSSSSPSFSPSLANLPPIRVRVDDNSSRLQQENKVAGLAEEQLVQMTIASGVKQDDGLVSVVSSAVAAAPAIPAAVTMPSVGVVTASDNVMNRVVSEDERSDLGFRKPPLPLQLVQPRTSGGLNLPSPDSVASDSSIASANSFSKTVYYQDQVQAAQLDNKLVALPNGKSEISDQVIQVHGQQVHDSGYTLPPQLDQNRQLQQQKPLVHASSHYIHHPAATGQIPVSSYYQVYAPPPQQQQLHPPIGQQQYPVYVMPVGPTQVTQPYNMALQPNMGDPNVLISGRTLMPQSAVTSAAYKDGTPPIYPTKSVSPTIPEVTPSVYKAPPPVASNPAYAPIPPNQFQPQYVGLSQFHHPPQSIVVASSSTTTNYGYEYGGHVQDQAYYTQQQTTTAPLLPQYQSMTPAAAAAALKDASKQFPADTIQQQNRASQPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9956g00001 679 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 69 154 - -
Vium9956g00001 679 MobiDBLite consensus disorder prediction 234 258 - -
Vium9956g00001 679 Pfam PB1 domain 66 152 IPR000270 GO:0005515
Vium9956g00001 679 MobiDBLite consensus disorder prediction 664 679 - -
Vium9956g00001 679 PANTHER OS05G0427100 PROTEIN-RELATED 21 536 - -
Vium9956g00001 679 ProSiteProfiles PB1 domain profile. 49 152 IPR000270 GO:0005515
Vium9956g00001 679 MobiDBLite consensus disorder prediction 19 38 - -
Vium9956g00001 679 SUPERFAMILY CAD & PB1 domains 65 162 - -
Vium9956g00001 679 Gene3D - 67 153 - -
Vium9956g00001 679 MobiDBLite consensus disorder prediction 19 40 - -
Vium9956g00001 679 CDD PB1_UP2 53 152 - -
Vium9956g00001 679 MobiDBLite consensus disorder prediction 659 679 - -
Vium9956g00001 679 SMART PB1_new 64 154 IPR000270 GO:0005515
Vium9956g00001 679 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9956g00001 Vium-Chr9956 20749 23583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9956g00001 48 203 MAP Kinase Kinase Kinase AT1G16270 39.130 2.46e-27 116