Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9949g00001 ATGGGAAGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTCATCATTTTCTCAAGCAGAGGGAAGCTCTATGAATTTGGAAATGTTGGCATTACCAAAACTATTGACCGATACCAACGTTGCTCGTTTACTCCTCAAGATGAACAACATGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTGAAGGCAAAGTACGAGTCTCTGCAAAGGACCCAGAGGCATTTGCTTGGAGAAGATCTTGGACCATTGAACATAAAGGAGTTGCAGAATCTTGAGAAACAGCTTGAAGGGGCATTAGCACAAGCCAGACAAAGGAAGACACAAATCATGATTGAACAAATGGAAGAGCTCCGCAGAAGGGAGCGCCATCTTGGAGATATGAACAAGCAGCTCAGACTGAAGCTTGAATCAGAGGGATTTAATCTTAAAGCTATGGAAAGCTTGTGGAGCTCTACTTCAGCTGCTGGAAATACTGCCTTTCCCTTTCAACCTCCTCAAACCAACCCTTTGGATTACCAGACTGAACCCTTTTTGCAAATAGGGTACCAACAATATGTTCAAGCTGAGGCATCTAATGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA 735 0.4408 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNVGITKTIDRYQRCSFTPQDEQHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLESEGFNLKAMESLWSSTSAAGNTAFPFQPPQTNPLDYQTEPFLQIGYQQYVQAEASNVPKSMACETNFMQGWIL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9949g00001 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium9949g00001 244 Coils Coil 149 169 - -
Vium9949g00001 244 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vium9949g00001 244 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vium9949g00001 244 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vium9949g00001 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium9949g00001 244 Coils Coil 120 143 - -
Vium9949g00001 244 FunFam MADS-box transcription factor 1 13 87 - -
Vium9949g00001 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium9949g00001 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Vium9949g00001 244 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium9949g00001 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium9949g00001 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium9949g00001 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium9949g00001 244 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium9949g00001 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9949g00001 Vium-Chr9949 551 10480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9949g00001 1 244 MADS-box Gene Family AT2G45650 65.873 1.79e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium9949g00001 K-box 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9949g00001 K09264 - gmx:100820061 442.58