Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9937g00004 ATGGACCAAGGCCAGCGCCATGTCAGCGCCACCAGCGCAACTAACAGTCCCGTGCTCCGCTGCACCACCGTCTGCACTCTCCCCTTCGCGCGCCTCGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCTGACTGTGCAGACGGTCGATCCGACGACGACGACGGCGCTGAGTGCGGGTACTCACGAGCGGTGTTGGTCCTCGACATGGTCTGGAACCTCGCCTTTGTCGTCGTTGCCGCCGGCGTCCTCCTCTCCACGCTTAGCGAGCGGCCGTCCACGCCGCTCAGACTCTGGCTCTGCGGCTACGCGTTCGAGTGCGTTCTTCATATGACTTTCGTCTTCTTTGAGTTCCGCGTCGGAGTTCGCGATTCCTTTGCTCACACTACCTATTGCATTGTGAAGAAGCTAGAGCCCATAAACACTCTGGCATCGTCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGTTGGTGGCCAAGCACTTTTGGAAGATTCTCCGAGGCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACATATTTTTTATTATCTTTTGCATTGGGATGGCATGTGTAGTTTTCTTTGCTCTCTTCTGTATCATCCCAATAATAGCACTAGCTTATGCTATGAAAATCAGAGAAGGCGCATCAGAAGAAGATATCAGGTCACTTCCTATGTATATGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAACAGCTTGTTAACACAAAAGTAGATTCATGCAATGGAAGCCATATGAGTGAACTTTCTCTCAATCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGCTGATGGAGCAGAAGTGTACCGCCTTCCTTGTACCCACCATTTTCACTGTGAATGCATTGGCCGTTGGCTTCGATCAAAAGCAACCTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACGTTGGTTTGA 969 0.5005 MDQGQRHVSATSATNSPVLRCTTVCTLPFARLVAASRRRLFLSDCADGRSDDDDGAECGYSRAVLVLDMVWNLAFVVVAAGVLLSTLSERPSTPLRLWLCGYAFECVLHMTFVFFEFRVGVRDSFAHTTYCIVKKLEPINTLASSVWWVFGFYWIVVGGQALLEDSPRLYWLTVVFLAFDIFFIIFCIGMACVVFFALFCIIPIIALAYAMKIREGASEEDIRSLPMYMFSQSNSLVMVDDNKKQLVNTKVDSCNGSHMSELSLNPDDSECCICLCPYADGAEVYRLPCTHHFHCECIGRWLRSKATCPLCKFNILRGDTLV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9937g00004 322 PANTHER TARGET OF ERK KINASE MPK-1 37 316 - -
Vium9937g00004 322 SUPERFAMILY RING/U-box 265 316 - -
Vium9937g00004 322 SMART ring_2 271 311 IPR001841 -
Vium9937g00004 322 Pfam Ring finger domain 270 312 IPR001841 -
Vium9937g00004 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 318 IPR013083 -
Vium9937g00004 322 ProSiteProfiles Zinc finger RING-type profile. 271 312 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9937g00004 Vium-Chr9937 5393 9853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9937g00004 52 319 C3H Transcription Factor Family AT1G68070 44.948 9.69e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9937g00004 - - gmx:100806994 565.459