Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9937g00003 ATGGACCAAGGCCAGCGCCATGTCAGCGCCACCAGCGCAACTAACAGTCCCGTGCTCCGCTGCACCACCGTCTGCACTCTCCCCTTCGCGCGCCTCGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCTGACTGTGCAGACGGTCGATCCGACGACGACGACGGCGCTGAGTGCGGGTACTCACGAGCGGTGTTGGTCCTCGACATGGTCTGGAACCTCGCCTTTGTCGTCGTTGCCGCCGGCGTCCTCCTCTCCACGCTTAGCGAGCGGCCGTCCACGCCGCTCAGACTCTGGCTCTGCGGCTACGCGTTCGAGTGCGTTCTTCATATGACTTTCGTCTTCTTTGAGTTCCGCGTCGGAGTTCGCGATTCCTTTGCTCACACTACCTATTGGTTAACAGTGGTCTTTCTAGCCTTTGACATATTTTTTATTATCTTTTGCATTGGGATGGCATGTGTAGTTTTCTTTGCTCTCTTCTGTATCATCCCAATAATAGCACTAGCTTATGCTATGAAAATCAGAGAAGGCGCATCAGAAGAAGATATCAGGTCACTTCCTATGTATATGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAACAGCTTGTTAACACAAAAGTAGATTCATGCAATGGAAGCCATATGAGTGAACTTTCTCTCAATCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGCTGATGGAGCAGAAGTGTACCGCCTTCCTTGTACCCACCATTTTCACTGTGAATGCATTGGCCGTTGGCTTCGATCAAAAGCAACCTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACGTTGGTTTGA 849 0.5065 MDQGQRHVSATSATNSPVLRCTTVCTLPFARLVAASRRRLFLSDCADGRSDDDDGAECGYSRAVLVLDMVWNLAFVVVAAGVLLSTLSERPSTPLRLWLCGYAFECVLHMTFVFFEFRVGVRDSFAHTTYWLTVVFLAFDIFFIIFCIGMACVVFFALFCIIPIIALAYAMKIREGASEEDIRSLPMYMFSQSNSLVMVDDNKKQLVNTKVDSCNGSHMSELSLNPDDSECCICLCPYADGAEVYRLPCTHHFHCECIGRWLRSKATCPLCKFNILRGDTLV 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9937g00003 282 Pfam Ring finger domain 230 272 IPR001841 -
Vium9937g00003 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 278 IPR013083 -
Vium9937g00003 282 PANTHER TARGET OF ERK KINASE MPK-1 38 276 - -
Vium9937g00003 282 SMART ring_2 231 271 IPR001841 -
Vium9937g00003 282 ProSiteProfiles Zinc finger RING-type profile. 231 272 IPR001841 -
Vium9937g00003 282 SUPERFAMILY RING/U-box 225 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9937g00003 Vium-Chr9937 5393 9860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9937g00003 52 279 C3H Transcription Factor Family AT1G68070 39.721 4.47e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9937g00003 - - gmx:100806994 469.544