Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9933g00018 ATGATGATGATGATGGAGATTTTTACTGGATACGCTGATGATTTCTCATGGATTTGTCTGAAGCATTTTGAGTTCACTTCTTTCTGTTCACAAAGGAGCACAATAGACACTATAAATCTAATTTTCCTCTGTGTCTTCTACGCTTCCACCATTGTCACTTTAATCAGAAGAAATTTTATAAATGGAAGTCATACCAAAACCAGGTTTTTCCTTTTTGTCTCTATCTGTTGTGCGATCACTAGCGTTGTGTTTTACAGTATTGCCCTGTGGAGTCTCATAGCCAAAACTGGGAACTCCATGGCTAACCACCTCAGCTGGTTAGCATGCGTTGTACGAGGATTTGTTTGGACTTCTTTAGCAGTTTCATTGCTTGTTCAGGGACACAAATGGATCAAAATTCTAAACTCTGTCTGGTGGGCATGTTCCTTTGCACTAGTTTCGGCTCTCCACATTGAAATTCTGTTTAGAAAGCATGGAATAGAAATTTTCGATGTCCTACTATGGCTCTTACACACGCTTCTTCTCTTCTGTGCCTTCCAAAACCTTGGTTGCTTTGTCATTCAAAATGTGCCAAAAGGTTTATCTGAACCGTTGTTAGCTCGGGAAGTTGACACAGAAGAAACAGGACTAGGTCGTGCTTCCTTTCTGAGCAAGTTGACTTTCTCTTGGGTTAACTCCTTACTCAGTTTGGGTTACTCAAAGCCACTATCTCTTGAAGACATCCCTTCCATTCTTTCTGAAGATAAGGCACACCTGTCCCACCAAAACTTCATGCATGCATGGCAATCCCTTGCGAGGGAGACAAGCAAGAACAACACCAAGAACTTGGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACATGCTAATATCTGTTTACGCATTGCTCAGAACCATTGCTGTGACTTTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCAAATAGTAGGGATTCCGGGGAGACAGATCTCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGAATCTGTGTCACAGAGACACTGGTTTTTTTGTACCAGGAGGTCGGGGTTGAAGATGAGATCAGCTCTGATGGTTGCAGTGTATGAAAAACAACTAAAGCTTTCAAACTCAGCAAGGACAAGACACTCGACAGGTGAAATTGTGAATTACATTGCTGTTGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATCTAACATGGGCATGTACATTGCATCTTCTTCTATCTATCAGTATCCTGTATGGAGTTGTGGGAGTAGGTGCACTTCCTGGTTTAATTCCTCTTCTTATATGTGGACTTCTCAATGTACCATTTGCCAAGATCCTACAAAAGTGCATGGCACAGTTCATGATTTCACAGGATGAGCGTCTGAGAGCAACTACAGAAATTCTAAATAGCATGAAAATCATCAAGTTACAGTCCTGGGAAGACAAATTCAAGAGTTTGGTTGAGAACCTACGTGCGAAAGAGTTCATTTGGCTATCTAAGGCACAGATGTTGAAAGCTTATGGATCACTTGTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCATCGGTTGTGCTGTTTTCAATAGTGCTCCATTAAATGCCGGGACCATATTTACAGTTCTTGCAACGTTGAGGAACTTGGGAGAACCTGTTCGAATGATTCCGGAGGCTCTATCTGTTATGATCCAAGTTAAGGTATCTTTTGATCGTCTCAATACCTTTTTGTTTGACGAAGAACTAGATACCAGTGCTGGTAACAAAAGCTATAAAAACCGAAGTTCAATTAATGCGGTAGAAATCCAAGCTGGCAACTTCATTTGGGACCATGAATCAGTGAGGCCAACTTTAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATATTAGGAGAGATTTCCAAGATATCAGGAACTGTCAATGTGTTAGGAAACATAGCATATGTTTCTCAAACTTCTTGGATACAGAGTGGGACGGTTCGAGAGAATATACTCTTCGGCAAGCCAATGGAGAAAACAAGATACGAGAGTGCCATTAGAGTCTGTGCCTTGGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCTGTCTACAATGATGCTGACATTTATCTCCTCGATGAACCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGCGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTGAATCAGGAAAGTATGAGAATCTCTTAACAACTGGGACTGCCTTTGAACAACTTGTGAGCGCTCACAAGGAAGCAATTACAGAGTTGGATCAGAATAATGAGAACCGAATTCATAGAGAAGAGTCTCAAGGTGTTTATAAATACCAAAGTGAGGGGGAGATTTCTACGGAGGGTCAACTTGGGATGCAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTCGGCTTCAAGACATTCTGGGATTATATTTCCTTTTCCAGGGGTTCATTGATGCTGTTTTATATAGTTTTGGCACAATGTGCTTTTGTTGCTTTGCAAACTGCATCAACGGTTTGGCTTGCTTTAGCCATTGATATTCCAAAAATAACTAGTGCCATCTTGATTGGGGTGTACGCATTAATTTCATTTTCTGGTGCTGCGTTTACATATATAAGGTCTCTCTTGACCTCTTACCTTGGATTAAATGCTTCCAAAGCTATCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTCTTCTTTGACTCAACCCCCATAGGAAGGATTTTAACAAGAGCTTCATCAGATTTAAGTATTTTGGATTTTGACATACCTTATTCGATCACCTTTGTAACATGTATACCAATTGAAATTTTGGTGATTATTGGTCTAATGGTTTTAGTAACATGGCCAGTTCTCATTGCTGCCATTCCAGCAATAGTTGCGTCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAAGGAAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAGCTGAAACATCACTTGGTGTTGTTACTGTGAGAGCATTCGATATGGTAGAAAGATTTTTTAAAAACTACTTAAAGCTTGTAGACACAGACGCAACACTGTTTTTACATTCTAATGTGGCCACGGAATGGTTACTTTTGAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCAGGTCTTGTGGGACTATCTCTCTCTTACGCATTATCCTTAACGTATTCACATATATTTTGGACTCGAATGTATTGCAACCTATTAAACTATCTTATCTCTGTTGAAAGAATCAAGCAATTCATTCACCTACCATCAGAACCTCCTGCTATTTTGAAGGACCACCAACCTCCATCTTCATGGCCATCCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCGAATGCTCCATTAGTGCTTAAGGGTATCACTTGCACGTTTAGAGAAGGGAGAAGAGTGGGAGTTGTAGGAAGAACCGGAAGTGGAAAGAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGACATTCTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTTTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTATTCAGATGATGAGATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTCTGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGACAACTGTTTTGTCTTGGAAGAGTACTGCTTAAGAGGAACAGAGTTCTTGTTCTGGATGAAGCCACTGCCTCCATTGACTCTGCCACAGATGCAATTCTACAAAGAATTATCAGAAAAGAGTTTGAAGCATGCACAGTTATTACAGTGGCTCACAGGGTTCCCACTGTTATAGACAGTGATATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTCGAGACTAATGGACACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTAA 4389 0.4074 MMMMMEIFTGYADDFSWICLKHFEFTSFCSQRSTIDTINLIFLCVFYASTIVTLIRRNFINGSHTKTRFFLFVSICCAITSVVFYSIALWSLIAKTGNSMANHLSWLACVVRGFVWTSLAVSLLVQGHKWIKILNSVWWACSFALVSALHIEILFRKHGIEIFDVLLWLLHTLLLFCAFQNLGCFVIQNVPKGLSEPLLAREVDTEETGLGRASFLSKLTFSWVNSLLSLGYSKPLSLEDIPSILSEDKAHLSHQNFMHAWQSLARETSKNNTKNLVFWSIVRTHLKENMLISVYALLRTIAVTFSPLILYAFVNFSNSRDSGETDLREGLTIVGFLILSKVVESVSQRHWFFCTRRSGLKMRSALMVAVYEKQLKLSNSARTRHSTGEIVNYIAVDAYRMGEFPWWFHLTWACTLHLLLSISILYGVVGVGALPGLIPLLICGLLNVPFAKILQKCMAQFMISQDERLRATTEILNSMKIIKLQSWEDKFKSLVENLRAKEFIWLSKAQMLKAYGSLVYWMSPTIVSAVVFIGCAVFNSAPLNAGTIFTVLATLRNLGEPVRMIPEALSVMIQVKVSFDRLNTFLFDEELDTSAGNKSYKNRSSINAVEIQAGNFIWDHESVRPTLRDVNLEIKWGQKVAVCGPVGAGKSSLLYAILGEISKISGTVNVLGNIAYVSQTSWIQSGTVRENILFGKPMEKTRYESAIRVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDEPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTESGKYENLLTTGTAFEQLVSAHKEAITELDQNNENRIHREESQGVYKYQSEGEISTEGQLGMQLTQEEEKEIGDVGFKTFWDYISFSRGSLMLFYIVLAQCAFVALQTASTVWLALAIDIPKITSAILIGVYALISFSGAAFTYIRSLLTSYLGLNASKAIFTSFNTAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPYSITFVTCIPIEILVIIGLMVLVTWPVLIAAIPAIVASKYVQEYYQASSRKLMRINGTTKAPVMNFAAETSLGVVTVRAFDMVERFFKNYLKLVDTDATLFLHSNVATEWLLLRIEALQNLTVITSALLLVLFPQGYVSSGLVGLSLSYALSLTYSHIFWTRMYCNLLNYLISVERIKQFIHLPSEPPAILKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFREGRRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSLVSDEGGNWSLGQRQLFCLGRVLLKRNRVLVLDEATASIDSATDAILQRIIRKEFEACTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTNSSFSKLVAEYWASCSKNSS 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9933g00018 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 907 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9933g00018 1462 FunFam Multidrug resistance protein associated1 587 852 - -
Vium9933g00018 1462 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 212 1454 - -
Vium9933g00018 1462 ProSitePatterns ABC transporters family signature. 734 748 IPR017871 GO:0005524|GO:0016887
Vium9933g00018 1462 SMART AAA_5 1244 1429 IPR003593 GO:0016887
Vium9933g00018 1462 SMART AAA_5 636 809 IPR003593 GO:0016887
Vium9933g00018 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 611 832 IPR003439 GO:0005524
Vium9933g00018 1462 Gene3D - 615 862 IPR027417 -
Vium9933g00018 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9933g00018 1462 Pfam ABC transporter 1235 1383 IPR003439 GO:0005524
Vium9933g00018 1462 Pfam ABC transporter 627 761 IPR003439 GO:0005524
Vium9933g00018 1462 Gene3D ABC transporter type 1, transmembrane domain 870 1199 IPR036640 GO:0005524|GO:0016020
Vium9933g00018 1462 Gene3D ABC transporter type 1, transmembrane domain 263 590 IPR036640 GO:0005524|GO:0016020
Vium9933g00018 1462 FunFam ABC transporter C family member 3 1201 1452 - -
Vium9933g00018 1462 CDD ABC_6TM_ABCC_D1 291 582 IPR044746 GO:0140359
Vium9933g00018 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1452 IPR003439 GO:0005524
Vium9933g00018 1462 CDD ABC_6TM_ABCC_D2 900 1193 IPR044726 GO:0140359
Vium9933g00018 1462 FunFam ABC transporter C family member 5 868 1199 - -
Vium9933g00018 1462 SUPERFAMILY ABC transporter transmembrane region 278 582 IPR036640 GO:0005524|GO:0016020
Vium9933g00018 1462 SUPERFAMILY ABC transporter transmembrane region 900 1200 IPR036640 GO:0005524|GO:0016020
Vium9933g00018 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 831 IPR027417 -
Vium9933g00018 1462 Pfam ABC transporter transmembrane region 907 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9933g00018 1462 Pfam ABC transporter transmembrane region 294 553 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9933g00018 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1451 IPR027417 -
Vium9933g00018 1462 Gene3D - 1202 1452 IPR027417 -
Vium9933g00018 1462 FunFam ABC transporter C family member 10 273 590 - -
Vium9933g00018 1462 CDD ABCC_MRP_domain1 609 809 - -
Vium9933g00018 1462 CDD ABCC_MRP_domain2 1216 1436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9933g00018 Vium-Chr9933 119175 125039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9933g00018 624 838 Calmodulin-binding Proteins AT2G36910 29.412 4.29e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9933g00018 - - gmx:100784827 2348.16