Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9933g00017 ATGAGTCGAGAGCAACAGAAGCGGGGGAAGCAAGAGAAAGGTTCTGATGGTGCTGAGAAGGTCATTGTTGCCGTTAAGGCATCTAAAGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTGACCCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTGCCTTCACAAAGTTCAGGCAGAAGATTATGGGGTTTTCCGAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAATATCAGAGCAAAAGAGTGATATCACTGATTCTTGCTCTCAGATGATCCTTCAACTCCATAACGTCTATGATCCAAACAAGATTAATGTCAGGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCAGCAGAAGCCAAAAAAGCACAAGCCAATTGGGTCGTGTTAGACAAACAGCTCAAACATGAGGAAAAGCGATGCATGGAAGAACTACAGTGTAACATCGTGGTTATGAAGCGTTCTCAACCAAAAGTACTGCGGTTGAATTTGATTGGACCTCCGAAGAAGGATGTTGAAGAAGCACGTCCATCACCTCCCGCCCAAGATGACATGTCTGAAAAGCGAAGCAAAATAAAGCTTGATTCCTTAAATTCTATCAAAGGACCTGCTGTAACTCCATCTAGCAGCCCTGAGCTAGGGACACCGTTCACTGCAACCGAAGCTGGTACTTCATCAGTTTCAAGCTCTGATCCGGGAACTTCACCATTCTTCATCTCAGAGACGAATGGTGAGTCCAAAAAAGAGGAAACTATTCAAGAAAGTCAAGAGCTTTGTGATACTAATTCAGACACTGAAAGTGAAAGTCTGTCCACATCTTCAGCAAGCATGAGATACCAACCATGGATCACAGAATTGCTTTTGCATCAACAGTCATCACAACGCAATGAAGAGAGATCAGAGACAACTCATGGTATGCCTCAAGCATCTACAACCAGAGCTTTCCTAGATAAGTATTCTAGGCTTGATAGAGGAGCTGGATTTGAAATCTCAACCTATAGGAATGACTTGGATTTCAGTGGAAATTTAAGAGAAGCAATAGCATTATCTGGAAATGCCCCACCTGGTCCCCCTCCATTGTGCTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTAGAACTTGCTACAGGCGGTTTTTCGCAGGCCAACTTCCTGGCTGAAGGAGGGTTTGGATCTGTTCACAGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTAGCTAGTTCTCAAGGTGATCTTGAGTTTTGTTCGGAGGTGGAAGTCCTGAGCTGTGCTCAACACCGGAATGTTGTTATGCTCATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGCAATGGATCATTGGATTCTCATTTATATGGGCGACAAAAGGATCCATTAGAGTGGTCTGCACGGCAAAAAATTGCTGTTGGTGCAGCTCGTGGATTACGATATCTTCATGAAGAGTGCAGAGTGGGTTGTATTATCCACCGTGACATGAGGCCAAACAACATTCTCATAACTCACGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACGGGTGTGGAAACTAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGTCAAATCACTGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTATTAGTTGAGCTTGTTACTGGGAGAAAAGCTGTGGATCTCACTAGGCCAAAGGGACAGCAGTGCCTTACCGAGTGGGCACGACCTCTCTTAGAAGAATATGCAACCGAGGAACTGATTGATCCAAGGCTTGGTAACCACTATTCTGAAAATGAGGTCTATTGCATGCTTCATGCTGCCTCATTATGCATACAGAGAGATCCTCAATGTAGACCACGCATGTCACAGGTTCTCCGAATACTAGAGGGTGACATGGTGATGGACACAAATTACATCTCCACTCCAGGCTATGATGCAGGAAACCGAAGTGGGAGACTGTGGTCAGAGCCATTGCAAAGGCAGCACCATTATAGTGGTCCCCTTTTAGAAGAGACTCTGGAGTCCTTCAGTGGGAAGCTATCCCTTGACAAGTACAAGCCTTCCTACTGGGGTGATAGGGACAAGGCTAGGAGGGCCTCATGTGAAGATGATATTTGA 2253 0.4487 MSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGIKKYPPGTISEQKSDITDSCSQMILQLHNVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPPKKDVEEARPSPPAQDDMSEKRSKIKLDSLNSIKGPAVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFISETNGESKKEETIQESQELCDTNSDTESESLSTSSASMRYQPWITELLLHQQSSQRNEERSETTHGMPQASTTRAFLDKYSRLDRGAGFEISTYRNDLDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQKDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYATEELIDPRLGNHYSENEVYCMLHAASLCIQRDPQCRPRMSQVLRILEGDMVMDTNYISTPGYDAGNRSGRLWSEPLQRQHHYSGPLLEETLESFSGKLSLDKYKPSYWGDRDKARRASCEDDI 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9933g00017 750 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Vium9933g00017 750 MobiDBLite consensus disorder prediction 303 322 - -
Vium9933g00017 750 MobiDBLite consensus disorder prediction 269 287 - -
Vium9933g00017 750 MobiDBLite consensus disorder prediction 214 255 - -
Vium9933g00017 750 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Vium9933g00017 750 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9933g00017 750 PANTHER OS01G0750732 PROTEIN 238 681 - -
Vium9933g00017 750 MobiDBLite consensus disorder prediction 175 287 - -
Vium9933g00017 750 FunFam Dual-specific kinase DSK1-like 12 166 - -
Vium9933g00017 750 SUPERFAMILY Protein kinase-like (PK-like) 387 681 IPR011009 -
Vium9933g00017 750 Gene3D Transferase(Phosphotransferase) domain 1 479 685 - -
Vium9933g00017 750 MobiDBLite consensus disorder prediction 180 208 - -
Vium9933g00017 750 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 682 - -
Vium9933g00017 750 Pfam Protein tyrosine and serine/threonine kinase 407 672 IPR001245 GO:0004672|GO:0006468
Vium9933g00017 750 CDD STKc_IRAK 409 675 - -
Vium9933g00017 750 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9933g00017 Vium-Chr9933 98000 103372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9933g00017 383 692 Trihelix Transcription Factor Family AT1G70460 51.097 3.72e-101 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vium9933g00017 PK_Tyr_Ser-Thr 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9933g00017 - - gmx:100816340 1437.94