Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9933g00013 ATGGCTTCAAGCTCTGGTGCAGAAGAAGCGTCACTGGACGATTACGCTTCCTTGATTGCAACCACCGATGTGGAGCTTCTGAAGCGTGCATGGCGCAACGAGAAGGCGGCGCCGGAGATTCTCCGCTACGAATATCGTTTGATTTCCCGCGTCAAGGAACAGATTCAACTCATGGAGGAAACCGTGGAGGAGAAATCCAGCGTCGGTAATGATCCTCTCTCAGTGTCTCTGTATCAGATGGACTTGGACAGAACCCAATTTCTGTTGAGATCCTATCTCCGCATCCGCATACAGAAGATTGAGAAGTACATGTTCCACATCCTAAAAACCGAAGAACTTTGGTCCAGGCTATCCAAAGACGAGAAAGATTTCGCCAGCACGTGTACAAGTGACCTAAACCAACATCTAGAGGTGACTGTCCTGTCGAAGCTTCCAGAAAATTACCAGTCTGTTCTAAAGCAATCTATAACAAGCGAAGAAGACGACATGGTCCCAGAACCACAACTAGACACATTTGTTTTATGTAGAAGTAAAGAGTATCTCACGGGCATTCAACTCGAAGATGGACCTGCTGATGACAGGTCGAAGCTGTTTGAGATGGAGCCAGGTGTCCTCCATTTCATATGTTACAGATCAATAAAAGCACTTGTGGAGAGCGGCAAAATTGATCTACTCTGA 678 0.4661 MASSSGAEEASLDDYASLIATTDVELLKRAWRNEKAAPEILRYEYRLISRVKEQIQLMEETVEEKSSVGNDPLSVSLYQMDLDRTQFLLRSYLRIRIQKIEKYMFHILKTEELWSRLSKDEKDFASTCTSDLNQHLEVTVLSKLPENYQSVLKQSITSEEDDMVPEPQLDTFVLCRSKEYLTGIQLEDGPADDRSKLFEMEPGVLHFICYRSIKALVESGKIDLL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9933g00013 225 Pfam DNA replication complex GINS protein SLD5 C-terminus 167 225 IPR031633 -
Vium9933g00013 225 Gene3D - 9 215 - -
Vium9933g00013 225 PIRSF GINS_Sld5 1 225 IPR008591 GO:0006261
Vium9933g00013 225 SUPERFAMILY PriA/YqbF domain 169 225 - -
Vium9933g00013 225 CDD GINS_A_Sld5 23 141 IPR038749 -
Vium9933g00013 225 Pfam GINS complex protein 50 122 IPR021151 -
Vium9933g00013 225 PANTHER SLD5 PROTEIN 8 225 IPR008591 GO:0006261
Vium9933g00013 225 SUPERFAMILY GINS helical bundle-like 20 152 IPR036224 -
Vium9933g00013 225 FunFam DNA replication complex GINS protein SLD5 8 215 - -
Vium9933g00013 225 CDD GINS_B_Sld5 167 225 IPR031633 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9933g00013 1 172 Core DNA Replication Machinery Family AT5G49010 63.953 2.02e-69 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9933g00013 K10735 - gmx:100784291 362.844