Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium9933g00010 | ATGAATATTTTAAGTATTACAGCCGTGGAGGAAACTCCTAAGCTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACCTTTATTTCCCTTCAATTGTTTATGCAGAAATGGAAAGCCTGCTTATGTGACTATAAAGATAGACAACCAAAATTTTGCAAAAACCAGTGAAGAAAGCAACCGTGTGTGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGCTGATTCATGCATCACCATTACACTGAAAACATCACATTCTTCCATACTGGGGAAGTTCCATATTCAGGCTCAGCAGCTGTTGAAGAAAGGAGGTTTGATCAACGGGTTGTTCCCACTCCTCATGGATAATGGAAAACCAAACACAAAACTTAAGTTGAAGTTTATGCTTTGGTTCAAGCCAGCAGATTTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAGTTTCAAGGGCTGAAGGAGGCTAGCTTTCCTCTAAGGTCCAACTGTCAGGTTAAACTTTATCATGATGCTCACCATTCTTCAGCTTTTCAACCTCCATTTGATCTATGTGGAGCTCCAAAGAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATTTAGTTTATATTGTAGGCTGGTCCTTCAATCCCATGATGGTTCTGGTTAGAGATCCTCACACAGAAATCCCACATGCCAGAGGAATTAAGTTAGGTGACCTGTTAAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTACCCTTTGTGAAGAACAAAGGCGAGTTGAACAACCAAGATGAGGAAGCTTTTGCTTTTTTCAACCACACAAAAGTAATATGCAGAAAGTGCCCCAGATTACACCACATGTTCCCAACACTCTTTGCTCACCATCAGAAGACTATAACAGTGGACACAAAACCTTCCAAATTTGTTGATGACAGAGAGCTAATGAGCTTTGTGGGTGGGTTGGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCATTGTTTCAAACACTCATTAGAGAATCTCATTGTTATGATTTCTACCAAACAAGCATTGAAGAAGCTAGCCTCAACAAAGGAGGGCCAAGGGCGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGCTAGCCAATTTTGAGCAAAGATGGACAAAACAGTGTGATCCTTCTTTTCTAATCCCTTCTAGCACCTTGTCAAATCTTATGCCAAAGACAAGCTCAAGCATTCCTAGGGAGAGGAATTGGAAAGTTCAAATATACAGGTCAATTGATCATATCTCAGTTAGTGAGTTGTCTACAAAGTCAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATATACATTGAAAGCCAGTATTTCATTGGAGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGTTGTACTAATCTAATTCCCATTGAAATTGCACTGAAGGTGGTAAGTAAGATTAAGGCAAAGGAGAGATTTGCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAACCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGAGCAACAGGGACACCCTAGAGACTACTTGAATTTCTTCTGTCTTGCAAACAGGGAGCAGAAGGGACCGGGAGAGTATCTTCCACTAGATTCACCCCAACCTGAAACTCAATACTGGAATGCTCAAAAGAATCGGAGATTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGACCTATACATACTGATAGGATCAGCTAATGTAAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATTGCAATAGGATGCTACCAGTCTCAAGATGAAGATGATAATCAGGAACTGAACCTAGATGAAGTTCAAGCATATAGACTGTCTCTATGGTATGAGCACACAGTGAGTGTTGATGAGTTGTTCTTGGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTACAACAGTGAAGAGGTGAGAGACATGGAAGGTGTTCACCTTGTGAGTTACCCTGTGAGAGTAACACCAGAAGGGTATGTGAAAGACCTCGCTGATGGAGTTCATTTTCCTGATACAAATTCTCTTGTCAAAGGCAAAAGGTCTAAAATATTGCCTCCTATCTTTACCACTTAG | 2310 | 0.4173 | MNILSITAVEETPKLLHGTIEATIFNASPYSPLFPFNCLCRNGKPAYVTIKIDNQNFAKTSEESNRVWNQTFQIQCAHPADSCITITLKTSHSSILGKFHIQAQQLLKKGGLINGLFPLLMDNGKPNTKLKLKFMLWFKPADLEPSWAKMLSNDWEFQGLKEASFPLRSNCQVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIVGWSFNPMMVLVRDPHTEIPHARGIKLGDLLKKKAEEGVAVRVMLWDDETSLPFVKNKGELNNQDEEAFAFFNHTKVICRKCPRLHHMFPTLFAHHQKTITVDTKPSKFVDDRELMSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIEEASLNKGGPRAPWHDAHACVIGEAAWDVLANFEQRWTKQCDPSFLIPSSTLSNLMPKTSSSIPRERNWKVQIYRSIDHISVSELSTKSTVERSIHEAYVEAIRRAERFIYIESQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESEQQGHPRDYLNFFCLANREQKGPGEYLPLDSPQPETQYWNAQKNRRFMVYVHSKFMIVDDLYILIGSANVNQRSMDGQRDTEIAIGCYQSQDEDDNQELNLDEVQAYRLSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWEIYNSEEVRDMEGVHLVSYPVRVTPEGYVKDLADGVHFPDTNSLVKGKRSKILPPIFTT | 769 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium9933g00010 | 769 | PANTHER | PHOSPHOLIPASE D | 15 | 751 | IPR015679 | - | |
| Vium9933g00010 | 769 | Gene3D | Endonuclease Chain A | 453 | 665 | - | - | |
| Vium9933g00010 | 769 | ProSitePatterns | EF-hand calcium-binding domain. | 659 | 671 | IPR018247 | - | |
| Vium9933g00010 | 769 | SMART | pld_4 | 306 | 343 | IPR001736 | GO:0003824 | |
| Vium9933g00010 | 769 | SMART | pld_4 | 614 | 641 | IPR001736 | GO:0003824 | |
| Vium9933g00010 | 769 | PIRSF | PLD_plant | 8 | 769 | IPR011402 | GO:0004630|GO:0005509|GO:0016020|GO:0046470 | |
| Vium9933g00010 | 769 | Pfam | Phospholipase D C terminal | 687 | 758 | IPR024632 | - | |
| Vium9933g00010 | 769 | Gene3D | C2 domain | 39 | 139 | IPR035892 | - | |
| Vium9933g00010 | 769 | Gene3D | Endonuclease Chain A | 184 | 435 | - | - | |
| Vium9933g00010 | 769 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 15 | 134 | IPR035892 | - | |
| Vium9933g00010 | 769 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 306 | 343 | IPR001736 | GO:0003824 | |
| Vium9933g00010 | 769 | SUPERFAMILY | Phospholipase D/nuclease | 165 | 416 | - | - | |
| Vium9933g00010 | 769 | SUPERFAMILY | Phospholipase D/nuclease | 452 | 696 | - | - | |
| Vium9933g00010 | 769 | Pfam | C2 domain | 46 | 119 | IPR000008 | - | |
| Vium9933g00010 | 769 | Pfam | Phospholipase D Active site motif | 617 | 641 | IPR001736 | GO:0003824 | |
| Vium9933g00010 | 769 | Pfam | Phospholipase D Active site motif | 307 | 343 | IPR001736 | GO:0003824 | |
| Vium9933g00010 | 769 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 614 | 641 | IPR001736 | GO:0003824 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium9933g00010 | Vium-Chr9933 | 70461 | 74397 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium9933g00010 | 38 | 769 | Phospholipase D Gene Family (Wang group) | AT1G55180 | 61.373 | 0.0 | 947 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium9933g00010 | K01115 | - | gmx:100812642 | 1472.99 |