Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9932g00004 ATGGCTAGCTTGATGCAACAGCAACCAAAGGGAGTTAATGGAGGTAGTAACCGCATACTCGCAGTCAATGTCTCTCCCTCTAACAACCTTCCTACACCATCTCAGCACGACGCCTCTTCAAATCATGAGAAGCCTGGGTGGAAAAAGTTCATGTCGTATGTGGGTCCTGGCTTTCTGGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTAATCACAAATATGAGCTGCTGTGGGTAATACTCATTGGACTGGTGTTTGCGCTTATAATTCAATCGTTGGCTGCGAATCTGGGCGTAACCACCGGAAAACACCTTTCAGAATTATGTAAAGCGGAATATCCATTATTGGTAAAGTACTGCTTGTGGTTATTAGCTGAGCTCGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTCGCGTTGAACATACTTTTCCACATCCCTGTATGGGCAGGAGTTCTCATAACTGGCTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTGGAACTGCTGATATCAGTGCTAGTTTTTGTAATGGCTGGATGTTTCTTTGGGGAAATGAGCTACGTAAAACCACCTGCTTCTGGTGTATTGAAAGGAATGTTTGTGCCAAAACTCAGTGGTCAGGGAGCTACAGGGGATGCTATTGCTCTTTTGGGTGCCCTTGTCATGCCGCACAACCTTTTCCTCCACTCTGCTCTGGTCCTGTCTAGAAAAGTACCCAGTTCCGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGCTTTGCATTGTTTGTGGCATTCCTAATCAATGTTGCAATGGTTTCTGTGTCGGGAACTGTTTGCGCTGCTGACAATCTTTCTGCAGAAAGTGCTGATAAGTGCAGCGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAACGTGTTGGGACGGTCGAGCTCTACCATTTATGCTATAGCACTGCTAGCCTCAGGACAAAGTTCAGCCATCACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTCTTGGACATGAGGATGAAAACATGGATCAGAAACTTTATGACTAGATGCATTGCCATAACACCTAGTCTTATTGTTTCAATCATTGGGGGTTCTCAAGGAGCTGGTCGGCTCATCATCATTGCATCGATGATACTTTCATTTGAGCTTCCATTCGCTTTGATTCCTCTGCTTAAGTTCAGCAGCAGCAGTACAAAGATGGGACCTCACAAGAATTCTATAATTATAATTGTGATCTCATGGATTCTGGGCATGGGAATCATTGGCATCAATGTGTACTACCTTTCTACTGCGTTCGTGGGTTGGTTAATTCATAGCAGTCTACCAAAGGTGGTAAATGTGTTGATTGGGATCGTAGTGTTTCCTCTAATGGCACTTTATGTTGGCTCAGTAATATACCTAACATTCAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAATGAAGCAGCAATAGAAAAGGGGTTTATGGTTGATGGTCAATTAGAGTTGAATGAAATTCCTTACAGAGAAGACTTGGCTGATATCCCCTTACCACCATAA 1623 0.4399 MASLMQQQPKGVNGGSNRILAVNVSPSNNLPTPSQHDASSNHEKPGWKKFMSYVGPGFLVSLAYLDPGNMETDLQAGANHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLLVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLITGCSTLLFLGLQRFGVRKLELLISVLVFVMAGCFFGEMSYVKPPASGVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFVAFLINVAMVSVSGTVCAADNLSAESADKCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDMRMKTWIRNFMTRCIAITPSLIVSIIGGSQGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIIIIVISWILGMGIIGINVYYLSTAFVGWLIHSSLPKVVNVLIGIVVFPLMALYVGSVIYLTFRKDTVKTYIETKNEAAIEKGFMVDGQLELNEIPYREDLADIPLPP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9932g00004 540 Hamap Divalent metal cation transporter MntH [mntH]. 35 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 Pfam Natural resistance-associated macrophage protein 71 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 48 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 NCBIfam Nramp family divalent metal transporter 55 421 - -
Vium9932g00004 540 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 PRINTS Natural resistance-associated macrophage protein signature 402 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium9932g00004 540 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 502 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9932g00004 Vium-Chr9932 8160 13091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9932g00004 15 539 Inorganic Solute Cotransporters AT1G15960 60.113 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9932g00004 K21398 - gmx:100787785 990.719