Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9929g00002 ATGGAGATTGAGGCAGCAGCAGCAGCCACCGACCGGAACAAAGGCTTCAACTGGGGTGCTGCTGCTACTGAAACTCAGAGGGATCTCCCATACACAGGCTTTGACAGAGGAAGCTTCTTGGCTTGGCAAGATCTCAGAGTTGTGCTTCCAAACTTTGGAAAAGGACCCACCAAGAGATTGCTCAATGGCCTCAATGGCTATGCTGAGCCTGGCCGAATCATGGCCATCATGGGTCCTTCTGGCTCTGGAAAATCTACCCTTCTTGATGCACTTGCAGGTAGACTCTCAAAAAATGTGGTTATGACAGGAAATGTTCTTCTAAATGGGAAGAAAAAAAGCCTAGGTTACGGCGGTGTTGCGTACGTAACTCAAGAGGATGTGCTTCTGGGAACTCTTACTGTGAAGGAAACTGTATCCTACTCGGCCCATCTACGTCTTCCAACATCAATGAGCAAAGAAGAAGTTAACAGCTTGGTGGATGGAACAATCATAGAAATGGGTCTCCAAGATTGCGCTGATAGGTTGATTGGTAACTGGCACTTGAGAGGTATAAGTGGAGGGGAGAAGAAGAGGCTTAGCATTGCACTTGAGATCCTTACAATGCCTCGTTTACTGTTCCTTGATGAACCCACCAGTGGCCTTGACAGTGCCTCTGCATTTTTTGTCGTTCAAACTCTCAGAAATGTTGCTCGTGATGGAAGAACTGTTATCTCTTCCATTCACCAGCCCAGCAGTGAAGTCTTTACACTCTTTGATGACCTTTTCTTGCTATCTGGCGGTGAAACAGTTTATTTTGGAGAAGCAAAATCTGCAATTGAGTTTTTTGCTGAAGCTGGTTTCCCTTGTCCACGTAAAAGAAATCCTTCTGATCACTTCCTACGATGCATCAATTCTGATTTCGACATTGTTACAGCTACGTTGAAGGGATCTCAGAGAATTCATGATGTTCCAAACTCAGCTGATCCTTTCATGAATTTGGCTACAGCAGAGATTAAGTCAATGCTAGTTGAGAAATATAGGCGTTCGGCATATGCCAGAAGGGCAAAGACCAGAATTCAAGAACTATCTACAGACGAAGGGCTTCAACCTCAGACACAAAATGGAAGTCAAGCTAGTTGGTGGAAGCAACTCTCAACTTTGACAAAGAGATCATTTGTGAACATGTGCAGAGATGTGGGGTACTACTGGTTGAGGATCATAATTTACATCATTGTGTCCATATGTGTGGGAACAGTTTATTTTGACATTGGCTACAGCTACACTTCCATTCTTGCCCGTGGTGCCTGTGGTGCATTCATATCAGGATTTATGACATTCATGTCAATTGGGGGCTTTCCATCATTCATTGAAGAAATGAAGGTGTTTTATCGAGAAAGGCTCAATGGATACTATGGAGTTGCAGCATATATTTTAGCCAATTTCCTTTCTTCTTTCCCATTCTTGGTTGCTATTGCTCTTACTTCTAGCACCATCACCTATAACATGGTGAAATTCAGGCCAGGGATAAGTCACTTTGTGTTCTTCACCTTCAACATCTACAGCTGCATCTCAGTAATAGAGAGCCTCATGATGGTTGTGGCTTCACTTGTTCCAAATTTCCTCATGGGAATAATTACAGGAGCTGGAATAATAGGAATCATGATGATGACCTCAGGATTCTTCAGGTTGCTGTCTGATCTTCCAAAACCAGTTTGGCGCTACCCAATTTCATATATCAGCTATGGTTCATGGGCAATTCAGGGTGCATACAAGAATGACTTGCTTGGGCTTGAGTTTGAGCCTCTGATACCTGGTGACAAAAAACTGACTGGAGAATACGTGATCACACACATGTTAGGCATTGAATTAAACCATTCAAAGTGGTGGGATTTGGCAGCTCTATTTGTGATTCTGTTGGCTTACAGACTTCTGTTCTTCACTGTTCTGAAATTCAAGGAGAGAGCATCACCACTGTTTCAAACACTTTATGCCAAGAGAACAATCCAACAGCTTGAAAAGAGACCCTCTTTCAGGAAGATGCCATCTTTCCCTTCTCAGAGGCATCAACCCCTCCATTCACTTTCTTCTCAAGATGGTCTTGATTCTCCACTCAACTAA 2097 0.4344 MEIEAAAAATDRNKGFNWGAAATETQRDLPYTGFDRGSFLAWQDLRVVLPNFGKGPTKRLLNGLNGYAEPGRIMAIMGPSGSGKSTLLDALAGRLSKNVVMTGNVLLNGKKKSLGYGGVAYVTQEDVLLGTLTVKETVSYSAHLRLPTSMSKEEVNSLVDGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTMPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFTLFDDLFLLSGGETVYFGEAKSAIEFFAEAGFPCPRKRNPSDHFLRCINSDFDIVTATLKGSQRIHDVPNSADPFMNLATAEIKSMLVEKYRRSAYARRAKTRIQELSTDEGLQPQTQNGSQASWWKQLSTLTKRSFVNMCRDVGYYWLRIIIYIIVSICVGTVYFDIGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYILANFLSSFPFLVAIALTSSTITYNMVKFRPGISHFVFFTFNIYSCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGSWAIQGAYKNDLLGLEFEPLIPGDKKLTGEYVITHMLGIELNHSKWWDLAALFVILLAYRLLFFTVLKFKERASPLFQTLYAKRTIQQLEKRPSFRKMPSFPSQRHQPLHSLSSQDGLDSPLN 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9929g00002 698 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 35 667 - -
Vium9929g00002 698 Pfam ABC-2 type transporter 241 298 IPR043926 GO:0140359
Vium9929g00002 698 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 284 IPR003439 GO:0005524
Vium9929g00002 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 276 IPR027417 -
Vium9929g00002 698 Gene3D - 41 278 IPR027417 -
Vium9929g00002 698 CDD ABCG_EPDR 37 266 - -
Vium9929g00002 698 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Vium9929g00002 698 FunFam ABC transporter G family member 11 34 278 - -
Vium9929g00002 698 MobiDBLite consensus disorder prediction 675 698 - -
Vium9929g00002 698 Pfam ABC transporter 61 212 IPR003439 GO:0005524
Vium9929g00002 698 Pfam ABC-2 type transporter 376 585 IPR013525 GO:0016020|GO:0140359
Vium9929g00002 698 SMART AAA_5 70 241 IPR003593 GO:0016887
Vium9929g00002 698 MobiDBLite consensus disorder prediction 666 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9929g00002 Vium-Chr9929 9279 16113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9929g00002 23 253 Calmodulin-binding Proteins AT2G36910 28.512 3.72e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9929g00002 K05681 - gmx:100807692 1268.83