Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9929g00001 ATGGAAATAGAATCAGTCACTGCAAACCAAAAGGGTGTTGCAGAGTGTAGAGAAACCATGGAAGTTTCAGAAAAGAGAGGAATGTACCTTGTATGGGAAGATTTAACTGTTGTGGTTCCAAATTTCGGAGATGGACACACTAAGAGATTGCTTAACGGGCTGAGTGGATATGCTGAACCTAACAAAATCATGGCTATAATGGGTCCTTCTGGCTCTGGAAAATCAACTCTTCTTGACGCTTTAGCAGGAAGACTCTCCAGAAACGTTATCATGTCTGGAAATGTGTTTCTAAATGGAAAGAAGAGGAGATTGGAATATGGTGGTACTGCTTATGTGACCCAAGAAGAGACAATGCTGGGAACTCTGACAGTGAGAGAGACTATATATTACTCAGCGAATCTAAGGCTTCCAGGGAGCATGAGGAGAGAAGAGGTGAATGAGATAATAGAAGGAACGATTATGGAAATGGGTCTTCAAGAATGTGCAGATCGGATAATAGGGAATTGGCACTTGAGAGGTATAAGCGGTGGAGAAAAGAGAAGACTGAGCATTGCTCTTGAAATCCTCACAAGGCCAACTCTCTTGTTCCTTGATGAACCCACCACTGGTCTCGACAGTGCATCAGCATATTTTGTTGCTCAAACTCTCAGAAATTTGGCTCAT 663 0.4253 MEIESVTANQKGVAECRETMEVSEKRGMYLVWEDLTVVVPNFGDGHTKRLLNGLSGYAEPNKIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVFLNGKKRRLEYGGTAYVTQEETMLGTLTVRETIYYSANLRLPGSMRREEVNEIIEGTIMEMGLQECADRIIGNWHLRGISGGEKRRLSIALEILTRPTLLFLDEPTTGLDSASAYFVAQTLRNLAH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9929g00001 221 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
Vium9929g00001 221 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Vium9929g00001 221 SMART AAA_5 60 221 IPR003593 GO:0016887
Vium9929g00001 221 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 19 221 - -
Vium9929g00001 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 220 IPR027417 -
Vium9929g00001 221 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 220 IPR003439 GO:0005524
Vium9929g00001 221 Gene3D - 16 221 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9929g00001 Vium-Chr9929 6 3458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9929g00001 49 216 Calmodulin-binding Proteins AT2G36910 30.857 7.01e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9929g00001 K05681 - vum:124849032 437.573