Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9923g00002 ATGGAAACTGGGAGAGAGGATGAGATTGTGGACATGCCCATGTCACCCCCAGTAGTTGGTTCAAATATTAACAATGACTTTTGTCACCACAAAGAGTTCATGTCTCAGACATATATGCAGAATAAGTACTCAGAGATTGATATAGACACTGAAGATTCCAACTTCGATCAAAATCGCCCCCTCCCCATATTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGAAATAGCCAAGCAGGCTCAGGTAACGTTGTGAAGTCAATGATGTCAAAGGTAACCACACACCTCACTGTGGAAGAAGATAGATACAAGAGAATTTTGAAGGGCATCACAGGAAGCATAGGCCCTGGTGAAATTCTTGCGTTGATGGGTCCTTCTGGCAGTGGGAAGACAACCTTGTTGAGAGTTATAGGAGGAAGACTGGTTGACAATGTAAAGGGAAAAGTAACTTACAATGATGTTCGTTTCAATCCAGCTCTCAAGAGGAGGATTGGGTTTGTGACACAAGAAGATGTGCTTTTCCCACAGTTAACAGTTGAAGAAACTTTAGTCTTCTCTGCACTTTTGAGGCTACCAGGCAGTATGAGCAAGCAGCAAAAGTATGCAAAAGTAGATACCACCATCAAGGAGCTAGGCCTAGAAAGATGTCGCCACACAAAAATAGCTGGAGGATATCTCAAAGGAATATCAGGAGGAGAAAGGAAGAGAACCTGCATTGGCTCTGAAATTCTTGTTGATCCTTCACTATTGCTACTTGATGAGCCAACTTCTGGCCTTGATTCCTCCTCAGCAAACAAACTCCTTCTCACTCTTCAAGGACTTGCCAAGGCTGGAAGGACCATAATCACAACAATACACCAGCCATCGAGTAGAATCTTTCACATGTTTGACAAACTACTTCTGATATCAGAAGGCTATCCTGTTTACTATGGAAAAGCTAAGGAAACAATAGAGTACTTCTCATTTTTGAGATTCACCCCTCAAATACCGATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGACAAGTGAATGACATAAGTGTTCCACCAGATATCTTTCAAGATCAAGAATCTTCTGGCCCTTCAAAAGTTGTTATTGAATATTTACAGCTCAAATACAAATCTCTACTGGAGCCAAAAGAAAAAGAACAGAATCATAGAGTAGCAAGCACACCAGAACACCTTCAATTAGCAATTCAGGTTAAGATGGAGTGGACATCTAGTTGGTTGGACCAATTTATGATTCTCTCCAGGAGAACATATAAAGCAAGAAGAAAGGAATACTTTGATAAGCTAAGACTATTTCAAGCACTTGGGATTGCACTTGTGTTGGGGCTCCTTTGGTGGAAATCTTCAATCAATACTGAAGCTGGACTCAGAGATCAGGTTGGTTTAGCATTCTACATCTGTATATTCTGGACATCTTCATGCATTTTTGCAGCAGTCTATGTCTTTCCATTTGAAGAGTACTACTTGGTCAAAGAAAATAAAGCTGACATGTACAGATTAAGCGTATACTATGCATGTAGCACTCTATGTGACATGGTGGCCACCGTTTTCTATCCTACTTTTTTCATGCTCATCTTGTACTTCATGGCTGGCTTTAACAGAGCTGTTGCTTCCTTCTTTTTGACACTATTAACTATTCTGTTAATAGCTATAACAAGTCAAGGGGCAGGTGAAATGTTTGGAGCTGCAATTATGAGTGTTAAAAGAGCAGGTACTGCTGCTACTTTGCTACTAATGTTATTCCTTCTCACAGGTGGCTACTATGTCCAGCACATACCAAAGTTCATGAGATGGTTGAAGTATTTATCTTTCATGTACTATGGTTTTAGGCTTCTTCTGAAAGTGCAGTATTCTGGAGATCAGTTATATGATTGTGGAAGCATGGGAGGGTGCAGGACCCTGCAGAGTTCTCCAACATTTGACAGTGTAAACTTGAAGGGTGGATTGAAAGAAGTGTGGATTCTGCTAGCTATGGCATTAATCTTTCGGTTGTTGGCTTACTTGTGTCTTCGTGTAAGAATTGTTGGTAGAAAAAACTAA 2055 0.4068 METGREDEIVDMPMSPPVVGSNINNDFCHHKEFMSQTYMQNKYSEIDIDTEDSNFDQNRPLPIFLKFEDVEYKVRNSQAGSGNVVKSMMSKVTTHLTVEEDRYKRILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLVDNVKGKVTYNDVRFNPALKRRIGFVTQEDVLFPQLTVEETLVFSALLRLPGSMSKQQKYAKVDTTIKELGLERCRHTKIAGGYLKGISGGERKRTCIGSEILVDPSLLLLDEPTSGLDSSSANKLLLTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKAKETIEYFSFLRFTPQIPMNPAEFLLDLATGQVNDISVPPDIFQDQESSGPSKVVIEYLQLKYKSLLEPKEKEQNHRVASTPEHLQLAIQVKMEWTSSWLDQFMILSRRTYKARRKEYFDKLRLFQALGIALVLGLLWWKSSINTEAGLRDQVGLAFYICIFWTSSCIFAAVYVFPFEEYYLVKENKADMYRLSVYYACSTLCDMVATVFYPTFFMLILYFMAGFNRAVASFFLTLLTILLIAITSQGAGEMFGAAIMSVKRAGTAATLLLMLFLLTGGYYVQHIPKFMRWLKYLSFMYYGFRLLLKVQYSGDQLYDCGSMGGCRTLQSSPTFDSVNLKGGLKEVWILLAMALIFRLLAYLCLRVRIVGRKN 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9923g00002 684 Pfam ABC-2 type transporter 286 346 IPR043926 GO:0140359
Vium9923g00002 684 SMART AAA_5 116 307 IPR003593 GO:0016887
Vium9923g00002 684 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 672 - -
Vium9923g00002 684 Pfam ABC-2 type transporter 414 622 IPR013525 GO:0016020|GO:0140359
Vium9923g00002 684 Pfam ABC transporter 107 257 IPR003439 GO:0005524
Vium9923g00002 684 Gene3D - 91 323 IPR027417 -
Vium9923g00002 684 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 329 IPR003439 GO:0005524
Vium9923g00002 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 323 IPR027417 -
Vium9923g00002 684 CDD ABCG_EPDR 83 311 - -
Vium9923g00002 684 FunFam ABC transporter G family member 22 94 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9923g00002 Vium-Chr9923 16130 19885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9923g00002 105 290 Calmodulin-binding Proteins AT2G36910 29.665 1.33e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9923g00002 K05681 - gmx:100806094 1159.82