Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00035 ATGGAGGCTATCAACAGAACCTCCTCCACCGCTTCTTCTTCCTCCGACTCTTCCTCTTCCGACTCCAACCCCCACAGAATCAAAGGTCCCTGGAGCGCCGAGGAGGATCGGATCCTCACCAGCCTCGTCGACCGCTACGGACCCCGCAACTGGTCCCTCATCAGCCGCTACATTAAAGGCAGGTCTGGCAAGTCCTGCCGCCTACGGTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGGCCCTTCTCTCCCCAAGAGGACGAGACCATCATCGCCGCCCACGCCCAGTACGGAAACAGGTGGGCCACCATTGCCCGTTTGCTGCCGGGTCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGCTTTTCTTGACATCAATGTCAACAACGCCAACAACGAAGCTGCCACTTCTTCTGCTCCTTCTCGTTCCTTCGAGGACGACCCGTTGACCGCGTTGACTCTCGCTCCCCCCGGTCTCTCTGGCGCCGCCGTGGCCGAGGACACCGTACTGGATCACCGGGTCTCTCCCGAGAGTGCGCCGGCGGGGTTTTGGGATATGATGAGAGATGTGATCGCGAGGGAAGTGAAGGAATATGTGTCTTCCAATTTTTCTGATAACTCGAACTTTCATTAA 663 0.5837 MEAINRTSSTASSSSDSSSSDSNPHRIKGPWSAEEDRILTSLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVQHRPFSPQEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKAFLDINVNNANNEAATSSAPSRSFEDDPLTALTLAPPGLSGAAVAEDTVLDHRVSPESAPAGFWDMMRDVIAREVKEYVSSNFSDNSNFH 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00035 220 FunFam MYB transcription factor 28 79 - -
Vium991g00035 220 PANTHER MYB PROTEIN-RELATED 28 149 - -
Vium991g00035 220 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Vium991g00035 220 CDD SANT 82 125 IPR001005 -
Vium991g00035 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Vium991g00035 220 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Vium991g00035 220 Gene3D - 27 79 - -
Vium991g00035 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 78 IPR017930 -
Vium991g00035 220 Pfam Myb-like DNA-binding domain 31 89 - -
Vium991g00035 220 Gene3D - 81 153 - -
Vium991g00035 220 CDD SANT 30 72 IPR001005 -
Vium991g00035 220 MobiDBLite consensus disorder prediction 1 26 - -
Vium991g00035 220 ProSiteProfiles Myb-like domain profile. 23 74 IPR001005 -
Vium991g00035 220 MobiDBLite consensus disorder prediction 1 30 - -
Vium991g00035 220 SMART sant 27 76 IPR001005 -
Vium991g00035 220 SMART sant 79 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00035 Vium-Chr991 233395 234213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00035 26 174 MYB Transcription Factor Family AT3G50060 58.442 1.08e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium991g00035 Myb_DNA-bind_6 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00035 - - vra:106761536 400.208