Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00029 ATGAGCAACGCCAACTGTAACAAGCCTTCTTCTCCCCAACCTACGATTAAACAACGTAGGCTCACTCGGCAGGGGAGGCTCCGATACCTCAGTGACAAAGACGCTGGTCTGCATTCCACCACTTCTCTACCCGCTTCTCCTCTTCCCTCTTTCAAGTCCGGTTCAGCTTCTGACCACTGGTCTTCCTCTGCGGTTCCGCAACCGCTTCCGCGTCCCGACTCCCCGTTGACTCGTCGATACGATCATCATCAACTCGGATCGCCCCCTTTCGAACAGCCTGGCTTCGCTTTTCGCAGAAGGTCGGTGGATCATGATGCGGTGAGAAGTATAAGGTCTACCAGCAATTTGGGTAGACCTTCTTTTGATCCAGTGGCTTCAAATGCCAAACACGATTTAAGAGTGAACATTCCACCTGCAAGAGTGTTGGCAGGCAATACCAGTTCATGTAAAGATCACATAGAACGCTCTCAAGATAATGACTCTGAAAATGTTTCCGACTTCAGATTGCATTTTTCGGCCAAGAGTGCCCCCAACAGCATATTCTCCAGCCCTGTTACTAGTCCACGTAGATCCAGCAATGTAGATTTCTATGATCCTTCCATCATTTTTCATCAAGATTTTAATGACATTTTGAGAGTGTCACCGGTTAAAACTGCTCAGAGTCCAGACCGGACTCCTCTGCGCAGCTCAGGGAACCTCCTCAATCCAGAGGGAAGTCAGAGTCAGCTTCATAAACATAGCTCAAGAGTGTTGCCTGAAAATAATCATGTTGATGCACATCCACTGCCCCTTCCTCCTAGAGCGTCACCACCACCAGCACAGTCATCTCCCCAGCATCAACCAAGTATCGTGCACCTCACCGTAGATAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATAGGGCGGGGATCATATGGATCTGTTTATCACGCAACCAACTTAGAGACTGGAGCCTCGTGTGCAATGAAGGAGGTGGAAATGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTCGAACAGGAAATTAGAATTCTCCGTCAATTACACCATCCCAACATTGTGCAGTACTATGGAAGTGAATTAGATGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCACTTGATAAGTTTATGCATGACCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAACTTCACAAGACATATTCTCTCTGGATTGGCATACTTGCATAGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGATGCAACGGGCATGGTTAAACTTGCGGATTTCGGGGTTTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGTAGTCCCTACTGGATGGCTCCCGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGACGTTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGGGAATACGAAGGGCCGCAAGCCATGTTCAAGGTACTGCACAAATCCCCAAAAATACCAGAAAATTTGTCATCAGATGGACAGGATTTCCTTCAGCAGTGCTTCAGAAGGAATCCGGCAGATCGACCATCGGCAGCACTGCTTCTTACTCATGCCTTTGTACAAAATTTGCACGATCAAGATGCTCTTCTTCATTCACAAGGCCAAAGCTGTCCCAGAGGAGACCCTGGATCTGGAGATGATTCAAGTAGACATAGTCCCGCTAACAGTTCAAGAAGTAATAACCGGGGAGTGCCAGCCTCCATTGGCGCACGGTTTTTGCATAAAATTCAAAATTTAATAGGTGACACTTCGAAAAAATATGACAGCGAGGAATCTGATCATGTCACTTCTTCTCGTAACTCTCCCTGCTCAATGACAGAAATAAACAGTCCTCAATCTAGTGCCCTCAATTACATGGCCAATTCCAGCAACATACCCCTCACCACCGTTATGAGAATCATCAGGCACATTTGA 2031 0.4623 MSNANCNKPSSPQPTIKQRRLTRQGRLRYLSDKDAGLHSTTSLPASPLPSFKSGSASDHWSSSAVPQPLPRPDSPLTRRYDHHQLGSPPFEQPGFAFRRRSVDHDAVRSIRSTSNLGRPSFDPVASNAKHDLRVNIPPARVLAGNTSSCKDHIERSQDNDSENVSDFRLHFSAKSAPNSIFSSPVTSPRRSSNVDFYDPSIIFHQDFNDILRVSPVKTAQSPDRTPLRSSGNLLNPEGSQSQLHKHSSRVLPENNHVDAHPLPLPPRASPPPAQSSPQHQPSIVHLTVDNSPSMKGQWQKGKLIGRGSYGSVYHATNLETGASCAMKEVEMFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSELDGDRLYIYMEYVHPGSLDKFMHDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDATGMVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWREYEGPQAMFKVLHKSPKIPENLSSDGQDFLQQCFRRNPADRPSAALLLTHAFVQNLHDQDALLHSQGQSCPRGDPGSGDDSSRHSPANSSRSNNRGVPASIGARFLHKIQNLIGDTSKKYDSEESDHVTSSRNSPCSMTEINSPQSSALNYMANSSNIPLTTVMRIIRHI 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00029 676 MobiDBLite consensus disorder prediction 1 20 - -
Vium991g00029 676 Gene3D Transferase(Phosphotransferase) domain 1 295 581 - -
Vium991g00029 676 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 79 585 - -
Vium991g00029 676 MobiDBLite consensus disorder prediction 622 646 - -
Vium991g00029 676 SMART serkin_6 298 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00029 676 MobiDBLite consensus disorder prediction 214 280 - -
Vium991g00029 676 Pfam Protein kinase domain 299 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00029 676 ProSiteProfiles Protein kinase domain profile. 298 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00029 676 MobiDBLite consensus disorder prediction 571 604 - -
Vium991g00029 676 MobiDBLite consensus disorder prediction 214 248 - -
Vium991g00029 676 MobiDBLite consensus disorder prediction 35 64 - -
Vium991g00029 676 ProSitePatterns Protein kinases ATP-binding region signature. 304 327 IPR017441 GO:0005524
Vium991g00029 676 FunFam Mitogen-activated protein kinase kinase kinase 5 295 598 - -
Vium991g00029 676 MobiDBLite consensus disorder prediction 587 603 - -
Vium991g00029 676 MobiDBLite consensus disorder prediction 1 95 - -
Vium991g00029 676 SUPERFAMILY Protein kinase-like (PK-like) 272 568 IPR011009 -
Vium991g00029 676 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00029 Vium-Chr991 211523 219126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00029 257 561 MAP Kinase Kinase Kinase AT5G66850 66.885 1.07e-148 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium991g00029 Pkinase 3.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00029 - - gmx:100781764 1076.23