Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00028 ATGAGCAACGCCAACTGTAACAAGCCTTCTTCTCCCCAACCTACGATTAAACAACGTAGGCTCACTCGGCAGGGGAGGCTCCGATACCTCAGTGACAAAGACGCTGGTCTGCATTCCACCACTTCTCTACCCGCTTCTCCTCTTCCCTCTTTCAAGTCCGGTTCAGCTTCTGACCACTGGTCTTCCTCTGCGGTTCCGCAACCGCTTCCGCGTCCCGACTCCCCGTTGACTCGTCGATACGATCATCATCAACTCGGATCGCCCCCTTTCGAACAGCCTGGCTTCGCTTTTCGCAGAAGGTCGGTGGATCATGATGCGGTGAGAAGTATAAGGTCTACCAGCAATTTGGGTAGACCTTCTTTTGATCCAGTGGCTTCAAATGCCAAACACGATTTAAGAGTGAACATTCCACCTGCAAGAGTGTTGGCAGGCAATACCAGTTCATGTAAAGATCACATAGAACGCTCTCAAGATAATGACTCTGAAAATGTTTCCGACTTCAGATTGCATTTTTCGGCCAAGAGTGCCCCCAACAGCATATTCTCCAGCCCTGTTACTAGTCCACGTAGATCCAGCAATAGTCCAGACCGGACTCCTCTGCGCAGCTCAGGGAACCTCCTCAATCCAGAGGGAAGTCAGAGTCAGCTTCATAAACATAGCTCAAGAGTGTTGCCTGAAAATAATCATGTTGATGCACATCCACTGCCCCTTCCTCCTAGAGCGTCACCACCACCAGCACAGTCATCTCCCCAGCATCAACCAAGTATCGTGCACCTCACCGTAGATAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATAGGGCGGGGATCATATGGATCTGTTTATCACGCAACCAACTTATACTCACGTGCATTCCTGTTGCGTCACAGAGAGACTGGAGCCTCGTGTGCAATGAAGGAGGTGGAAATGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTCGAACAGGAAATTAGAATTCTCCGTCAATTACACCATCCCAACATTGTGCAGTACTATGGAAGTGAATTAGATGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCACTTGATAAGTTTATGCATGACCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAACTTCACAAGACATATTCTCTCTGGATTGGCATACTTGCATAGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGATGCAACGGGCATGGTTAAACTTGCGGATTTCGGGGTTTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGTAGTCCCTACTGGATGGCTCCCGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGACGTTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGGGAATACGAAGGGCCGCAAGCCATGTTCAAGGTACTGCACAAATCCCCAAAAATACCAGAAAATTTGTCATCAGATGGACAGGATTTCCTTCAGCAGTGCTTCAGAAGGAATCCGGCAGATCGACCATCGGCAGCACTGCTTCTTACTCATGCCTTTGTACAAAATTTGCACGATCAAGATGCTCTTCTTCATTCACAAGGCCAAAGCTGTCCCAGAGGAGACCCTGGATCTGGAGATGATTCAAGTAGACATAGTCCCGCTAACAGTTCAAGAAGTAATAACCGGGGAGTGCCAGCCTCCATTGGCGCACGGTTTTTGCATAAAATTCAAAATTTAATAGGTGACACTTCGAAAAAATATGACAGCGAGGAATCTGATCATGTCACTTCTTCTCGTAACTCTCCCTGCTCAATGACAGAAATAAACAGTCCTCAATCTAGTGCCCTCAATTACATGGCCAATTCCAGCAACATACCCCTCACCACCGTTATGAGAATCATCAGGCACATTTGA 1980 0.4677 MSNANCNKPSSPQPTIKQRRLTRQGRLRYLSDKDAGLHSTTSLPASPLPSFKSGSASDHWSSSAVPQPLPRPDSPLTRRYDHHQLGSPPFEQPGFAFRRRSVDHDAVRSIRSTSNLGRPSFDPVASNAKHDLRVNIPPARVLAGNTSSCKDHIERSQDNDSENVSDFRLHFSAKSAPNSIFSSPVTSPRRSSNSPDRTPLRSSGNLLNPEGSQSQLHKHSSRVLPENNHVDAHPLPLPPRASPPPAQSSPQHQPSIVHLTVDNSPSMKGQWQKGKLIGRGSYGSVYHATNLYSRAFLLRHRETGASCAMKEVEMFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSELDGDRLYIYMEYVHPGSLDKFMHDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDATGMVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWREYEGPQAMFKVLHKSPKIPENLSSDGQDFLQQCFRRNPADRPSAALLLTHAFVQNLHDQDALLHSQGQSCPRGDPGSGDDSSRHSPANSSRSNNRGVPASIGARFLHKIQNLIGDTSKKYDSEESDHVTSSRNSPCSMTEINSPQSSALNYMANSSNIPLTTVMRIIRHI 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00028 659 MobiDBLite consensus disorder prediction 1 20 - -
Vium991g00028 659 SUPERFAMILY Protein kinase-like (PK-like) 245 551 IPR011009 -
Vium991g00028 659 Pfam Protein kinase domain 272 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00028 659 MobiDBLite consensus disorder prediction 554 587 - -
Vium991g00028 659 MobiDBLite consensus disorder prediction 236 250 - -
Vium991g00028 659 MobiDBLite consensus disorder prediction 605 629 - -
Vium991g00028 659 MobiDBLite consensus disorder prediction 35 64 - -
Vium991g00028 659 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 79 568 - -
Vium991g00028 659 MobiDBLite consensus disorder prediction 177 253 - -
Vium991g00028 659 ProSitePatterns Protein kinases ATP-binding region signature. 277 310 IPR017441 GO:0005524
Vium991g00028 659 MobiDBLite consensus disorder prediction 570 586 - -
Vium991g00028 659 SMART serkin_6 271 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00028 659 FunFam Mitogen-activated protein kinase kinase kinase 5 268 581 - -
Vium991g00028 659 MobiDBLite consensus disorder prediction 142 163 - -
Vium991g00028 659 Gene3D Transferase(Phosphotransferase) domain 1 268 564 - -
Vium991g00028 659 ProSiteProfiles Protein kinase domain profile. 271 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00028 659 MobiDBLite consensus disorder prediction 177 221 - -
Vium991g00028 659 MobiDBLite consensus disorder prediction 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00028 Vium-Chr991 211520 219126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00028 230 544 MAP Kinase Kinase Kinase AT5G66850 64.762 7.53e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium991g00028 Pkinase 2.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00028 - - gmx:100781764 1038.1