Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00026 ATGAGCAACGCCAACTGTAACAAGCCTTCTTCTCCCCAACCTACGATTAAACAACGTAGGCTCACTCGGCAGGGGAGGCTCCGATACCTCAGTGACAAAGACGCTGGTCTGCATTCCACCACTTCTCTACCCGCTTCTCCTCTTCCCTCTTTCAAGTCCGGTTCAGCTTCTGACCACTGGTCTTCCTCTGCGGTTCCGCAACCGCTTCCGCGTCCCGACTCCCCGTTGACTCGTCGATACGATCATCATCAACTCGGATCGCCCCCTTTCGAACAGCCTGGCTTCGCTTTTCGCAGGTCGGTGGATCATGATGCGGTGAGAAGTATAAGGTCTACCAGCAATTTGGGTAGACCTTCTTTTGATCCAGTGGCTTCAAATGCCAAACACGATTTAAGAGTGAACATTCCACCTGCAAGAGTGTTGGCAGGCAATACCAGTTCATGTAAAGATCACATAGAACGCTCTCAAGATAATGACTCTGAAAATGTTTCCGACTTCAGATTGCATTTTTCGGCCAAGAGTGCCCCCAACAGCATATTCTCCAGCCCTGTTACTAGTCCACGTAGATCCAGCAATGTAGATTTCTATGATCCTTCCATCATTTTTCATCAAGATTTTAATGACATTTTGAGAGTGTCACCGGTTAAAACTGCTCAGAGTCCAGACCGGACTCCTCTGCGCAGCTCAGGGAACCTCCTCAATCCAGAGGGAAGTCAGAGTCAGCTTCATAAACATAGCTCAAGAGTGTTGCCTGAAAATAATCATGTTGATGCACATCCACTGCCCCTTCCTCCTAGAGCGTCACCACCACCAGCACAGTCATCTCCCCAGCATCAACCAAGTATCGTGCACCTCACCGTAGATAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATAGGGCGGGGATCATATGGATCTGTTTATCACGCAACCAACTTATACTCACGTGCATTCCTGTTGCGTCACAGAGAGACTGGAGCCTCGTGTGCAATGAAGGAGGTGGAAATGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTCGAACAGGAAATTAGAATTCTCCGTCAATTACACCATCCCAACATTGTGCAGTACTATGGAAGTGAATTAGATGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCACTTGATAAGTTTATGCATGACCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAACTTCACAAGACATATTCTCTCTGGATTGGCATACTTGCATAGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGATGCAACGGGCATGGTTAAACTTGCGGATTTCGGGGTTTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGTAGTCCCTACTGGATGGCTCCCGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGACGTTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGGGAATACGAAGGGCCGCAAGCCATGTTCAAGGTACTGCACAAATCCCCAAAAATACCAGAAAATTTGTCATCAGATGGACAGGATTTCCTTCAGCAGTGCTTCAGAAGGAATCCGGCAGATCGACCATCGGCAGCACTGCTTCTTACTCATGCCTTTGTACAAAATTTGCACGATCAAGATGCTCTTCTTCATTCACAAGGCCAAAGCTGTCCCAGAGGAGACCCTGGATCTGGAGATGATTCAAGTAGACATAGTCCCGCTAACAGTTCAAGAAGTAATAACCGGGGAGTGCCAGCCTCCATTGGCGCACGGTTTTTGCATAAAATTCAAAATTTAATAGGTGACACTTCGAAAAAATATGACAGCGAGGAATCTGATCATGTCACTTCTTCTCGTAACTCTCCCTGCTCAATGACAGAAATAAACAGTCCTCAATCTAGTGCCCTCAATTACATGGCCAATTCCAGCAACATACCCCTCACCACCGTTATGAGAATCATCAGGCACATTTGA 2058 0.4631 MSNANCNKPSSPQPTIKQRRLTRQGRLRYLSDKDAGLHSTTSLPASPLPSFKSGSASDHWSSSAVPQPLPRPDSPLTRRYDHHQLGSPPFEQPGFAFRRSVDHDAVRSIRSTSNLGRPSFDPVASNAKHDLRVNIPPARVLAGNTSSCKDHIERSQDNDSENVSDFRLHFSAKSAPNSIFSSPVTSPRRSSNVDFYDPSIIFHQDFNDILRVSPVKTAQSPDRTPLRSSGNLLNPEGSQSQLHKHSSRVLPENNHVDAHPLPLPPRASPPPAQSSPQHQPSIVHLTVDNSPSMKGQWQKGKLIGRGSYGSVYHATNLYSRAFLLRHRETGASCAMKEVEMFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSELDGDRLYIYMEYVHPGSLDKFMHDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDATGMVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWREYEGPQAMFKVLHKSPKIPENLSSDGQDFLQQCFRRNPADRPSAALLLTHAFVQNLHDQDALLHSQGQSCPRGDPGSGDDSSRHSPANSSRSNNRGVPASIGARFLHKIQNLIGDTSKKYDSEESDHVTSSRNSPCSMTEINSPQSSALNYMANSSNIPLTTVMRIIRHI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00026 685 MobiDBLite consensus disorder prediction 1 20 - -
Vium991g00026 685 MobiDBLite consensus disorder prediction 213 247 - -
Vium991g00026 685 Gene3D Transferase(Phosphotransferase) domain 1 294 590 - -
Vium991g00026 685 ProSitePatterns Protein kinases ATP-binding region signature. 303 336 IPR017441 GO:0005524
Vium991g00026 685 ProSiteProfiles Protein kinase domain profile. 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00026 685 Pfam Protein kinase domain 298 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00026 685 SMART serkin_6 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00026 685 SUPERFAMILY Protein kinase-like (PK-like) 271 577 IPR011009 -
Vium991g00026 685 MobiDBLite consensus disorder prediction 596 612 - -
Vium991g00026 685 MobiDBLite consensus disorder prediction 262 276 - -
Vium991g00026 685 MobiDBLite consensus disorder prediction 35 64 - -
Vium991g00026 685 MobiDBLite consensus disorder prediction 580 613 - -
Vium991g00026 685 FunFam Mitogen-activated protein kinase kinase kinase 5 294 607 - -
Vium991g00026 685 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 79 594 - -
Vium991g00026 685 MobiDBLite consensus disorder prediction 213 279 - -
Vium991g00026 685 MobiDBLite consensus disorder prediction 631 655 - -
Vium991g00026 685 MobiDBLite consensus disorder prediction 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00026 Vium-Chr991 211518 219126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00026 256 570 MAP Kinase Kinase Kinase AT5G66850 64.762 1.85e-145 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium991g00026 Pkinase 2.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00026 - - gmx:100781764 1061.6