LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium991g00026	ATGAGCAACGCCAACTGTAACAAGCCTTCTTCTCCCCAACCTACGATTAAACAACGTAGGCTCACTCGGCAGGGGAGGCTCCGATACCTCAGTGACAAAGACGCTGGTCTGCATTCCACCACTTCTCTACCCGCTTCTCCTCTTCCCTCTTTCAAGTCCGGTTCAGCTTCTGACCACTGGTCTTCCTCTGCGGTTCCGCAACCGCTTCCGCGTCCCGACTCCCCGTTGACTCGTCGATACGATCATCATCAACTCGGATCGCCCCCTTTCGAACAGCCTGGCTTCGCTTTTCGCAGGTCGGTGGATCATGATGCGGTGAGAAGTATAAGGTCTACCAGCAATTTGGGTAGACCTTCTTTTGATCCAGTGGCTTCAAATGCCAAACACGATTTAAGAGTGAACATTCCACCTGCAAGAGTGTTGGCAGGCAATACCAGTTCATGTAAAGATCACATAGAACGCTCTCAAGATAATGACTCTGAAAATGTTTCCGACTTCAGATTGCATTTTTCGGCCAAGAGTGCCCCCAACAGCATATTCTCCAGCCCTGTTACTAGTCCACGTAGATCCAGCAATGTAGATTTCTATGATCCTTCCATCATTTTTCATCAAGATTTTAATGACATTTTGAGAGTGTCACCGGTTAAAACTGCTCAGAGTCCAGACCGGACTCCTCTGCGCAGCTCAGGGAACCTCCTCAATCCAGAGGGAAGTCAGAGTCAGCTTCATAAACATAGCTCAAGAGTGTTGCCTGAAAATAATCATGTTGATGCACATCCACTGCCCCTTCCTCCTAGAGCGTCACCACCACCAGCACAGTCATCTCCCCAGCATCAACCAAGTATCGTGCACCTCACCGTAGATAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATAGGGCGGGGATCATATGGATCTGTTTATCACGCAACCAACTTATACTCACGTGCATTCCTGTTGCGTCACAGAGAGACTGGAGCCTCGTGTGCAATGAAGGAGGTGGAAATGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTCGAACAGGAAATTAGAATTCTCCGTCAATTACACCATCCCAACATTGTGCAGTACTATGGAAGTGAATTAGATGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCACTTGATAAGTTTATGCATGACCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAACTTCACAAGACATATTCTCTCTGGATTGGCATACTTGCATAGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGATGCAACGGGCATGGTTAAACTTGCGGATTTCGGGGTTTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGTAGTCCCTACTGGATGGCTCCCGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGACGTTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGGGAATACGAAGGGCCGCAAGCCATGTTCAAGGTACTGCACAAATCCCCAAAAATACCAGAAAATTTGTCATCAGATGGACAGGATTTCCTTCAGCAGTGCTTCAGAAGGAATCCGGCAGATCGACCATCGGCAGCACTGCTTCTTACTCATGCCTTTGTACAAAATTTGCACGATCAAGATGCTCTTCTTCATTCACAAGGCCAAAGCTGTCCCAGAGGAGACCCTGGATCTGGAGATGATTCAAGTAGACATAGTCCCGCTAACAGTTCAAGAAGTAATAACCGGGGAGTGCCAGCCTCCATTGGCGCACGGTTTTTGCATAAAATTCAAAATTTAATAGGTGACACTTCGAAAAAATATGACAGCGAGGAATCTGATCATGTCACTTCTTCTCGTAACTCTCCCTGCTCAATGACAGAAATAAACAGTCCTCAATCTAGTGCCCTCAATTACATGGCCAATTCCAGCAACATACCCCTCACCACCGTTATGAGAATCATCAGGCACATTTGA	2058	0.4631	MSNANCNKPSSPQPTIKQRRLTRQGRLRYLSDKDAGLHSTTSLPASPLPSFKSGSASDHWSSSAVPQPLPRPDSPLTRRYDHHQLGSPPFEQPGFAFRRSVDHDAVRSIRSTSNLGRPSFDPVASNAKHDLRVNIPPARVLAGNTSSCKDHIERSQDNDSENVSDFRLHFSAKSAPNSIFSSPVTSPRRSSNVDFYDPSIIFHQDFNDILRVSPVKTAQSPDRTPLRSSGNLLNPEGSQSQLHKHSSRVLPENNHVDAHPLPLPPRASPPPAQSSPQHQPSIVHLTVDNSPSMKGQWQKGKLIGRGSYGSVYHATNLYSRAFLLRHRETGASCAMKEVEMFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSELDGDRLYIYMEYVHPGSLDKFMHDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDATGMVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWREYEGPQAMFKVLHKSPKIPENLSSDGQDFLQQCFRRNPADRPSAALLLTHAFVQNLHDQDALLHSQGQSCPRGDPGSGDDSSRHSPANSSRSNNRGVPASIGARFLHKIQNLIGDTSKKYDSEESDHVTSSRNSPCSMTEINSPQSSALNYMANSSNIPLTTVMRIIRHI	685

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium991g00026	685	MobiDBLite	consensus disorder prediction	1	20	-	-
Vium991g00026	685	MobiDBLite	consensus disorder prediction	213	247	-	-
Vium991g00026	685	Gene3D	Transferase(Phosphotransferase) domain 1	294	590	-	-
Vium991g00026	685	ProSitePatterns	Protein kinases ATP-binding region signature.	303	336	IPR017441	GO:0005524
Vium991g00026	685	ProSiteProfiles	Protein kinase domain profile.	297	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium991g00026	685	Pfam	Protein kinase domain	298	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium991g00026	685	SMART	serkin_6	297	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vium991g00026	685	SUPERFAMILY	Protein kinase-like (PK-like)	271	577	IPR011009	-
Vium991g00026	685	MobiDBLite	consensus disorder prediction	596	612	-	-
Vium991g00026	685	MobiDBLite	consensus disorder prediction	262	276	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium991g00026	Vium-Chr991	211518	219126	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium991g00026	256	570	MAP Kinase Kinase Kinase	AT5G66850	64.762	1.85e-145	437

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vium991g00026		Pkinase	2.8e-63	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium991g00026	-		-	gmx:100781764	1061.6

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