Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00022 ATGGCGATTCGAGTTACCTTCTCCTTCTCTGGCTACGTAGCCCAGAATCTCGTCTCCTCCGCCGGCGTCCGCGTCGCCAATTCGCGATGCGTCCAAGAATGCTGGATCCGCACGCGCCTCTTCGGCGCCACCCAGAAAACGGAACTAGATTCTTCCGCCGGCGGAGTCCGAAATTTCTCCAGGTCCAACTGTTGGGCCCAGTCCACTTACTCCACCCTCGCCGGTGAGTTTCTCGGCGACGGCTGCAAGAGTCCAATCATCTTGGGCCTGATTTCAATTATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCTCCCTTCAAAACAAATTCCATTATTCCCTTCTTGCCCGGTTCGAAGTGGCTTCCTTGCAACGAGTCCATTCCCGACCCCACCACGTGGGAGGTCGATAAAGGTGGCACGAAACACACCGTTCCGAGTGATGTTCCCGGTTTTGGAAAGACTAGTTGGCTTTCGCGGCTTTTGAACGTGTCTTCTGAAGATGCGAAGGCTGCGTTCACTGCCATTACCGTCAGTTTGCTGTTTAAATCGTCTTTGGCTGAACCTAGATCCATTCCCTCCGCTTCTATGTATCCTACTCTTGAAGTGGGTGACCGCGTTTTAACCGAGAAGGTTTCGTTCCTCTTCAGGAAGCCTGATGTTTCGGATATAGTGATTTTTAAAGCGCCTCCCTGTTTGGAGGAGTATGGTTTTACTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCAGGGGATTGTGTTGAGGTTCGAGATGGGAAACTACTGGTAAATGGTGTGGCTGAAGAACAGGAATTTCTATTAGAACCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGATAATCGGAATAACAGCCTTGATTCTCACAACTGGGGCCCCCTCCCAATCGAGAACATTGTTGGTAGATCCATGTTTAGGTACTGGCCTCCACCCAAGGTGTCTGACTCTGACACCCTTCGTAAACTGCCTCCTAGGAACAAATCTGTGGCAATTTCTTGA 1080 0.5037 MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWIRTRLFGATQKTELDSSAGGVRNFSRSNCWAQSTYSTLAGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTNSIIPFLPGSKWLPCNESIPDPTTWEVDKGGTKHTVPSDVPGFGKTSWLSRLLNVSSEDAKAAFTAITVSLLFKSSLAEPRSIPSASMYPTLEVGDRVLTEKVSFLFRKPDVSDIVIFKAPPCLEEYGFTSSDVFIKRIVAKAGDCVEVRDGKLLVNGVAEEQEFLLEPLAYEMDPMVVPEGYVFVMGDNRNNSLDSHNWGPLPIENIVGRSMFRYWPPPKVSDSDTLRKLPPRNKSVAIS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00022 359 FunFam Peptidase/ serine-type peptidase 203 334 - -
Vium991g00022 359 NCBIfam signal peptidase I 180 336 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium991g00022 359 SUPERFAMILY LexA/Signal peptidase 195 340 IPR036286 -
Vium991g00022 359 Gene3D Umud Fragment, subunit A 191 348 - -
Vium991g00022 359 PANTHER SIGNAL PEPTIDASE I 130 342 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium991g00022 359 MobiDBLite consensus disorder prediction 340 359 - -
Vium991g00022 359 Pfam Signal peptidase, peptidase S26 178 335 IPR019533 GO:0004252|GO:0006465
Vium991g00022 359 CDD S26_SPase_I 197 329 IPR019533 GO:0004252|GO:0006465
Vium991g00022 359 ProSitePatterns Signal peptidases I serine active site. 203 210 IPR019756 GO:0004252|GO:0016020
Vium991g00022 359 ProSitePatterns Signal peptidases I signature 3. 302 315 IPR019758 GO:0004252|GO:0016020
Vium991g00022 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 194 210 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium991g00022 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 297 316 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium991g00022 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 253 265 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00022 Vium-Chr991 184208 186764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00022 206 336 MADS-box Gene Family AT1G29960 32.576 9.61e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00022 K03100 - gmx:100817525 622.468