Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00021 ATGGCCTCCAGCTTCTTTCTCTTACTCTCCCTATTCCTCTTCTCATCACTATCATCTTTCTCCCATGCACTTTCCGATGTCGAAGCCTCTTTCATTGCTCGTCGCCAAATGATGCATTTGGAGGAGAATCAGGACTTGCCCGACAACTACGTAAGTAACTACAAAACAAACCTAAAATTCGCTCACACCAGGCTAAAAGCTGCATACATTGCACTCGAGGCGTGGAAAAAAGCTATCTACTCAGACCCCTCAAATTTCACATCAAATTGGTCGGGCCAAGACGTTTGCTCCTACAATGGAGTTTTTTGTGCACAGGCTCTTGATGACAAAAATATCCAAGTTGTGGCTGGGATTGATCTTAACCATGCAGACATCGCAGGTTACCTTCCCCCAGAAGTTGGTCTGTTAACTGACCTTGCACTTTTGCATATAAACTCCAACAGGTTTTGCGGGATCATCACACACAGCTTTTCCAACCTTCGGATTCTCTATGAGCTAGACATCAGCAACAACCGCTTTGTTGGGCGGTTCCCTGAACACGTGCTTGAAATTTCAGAACTCAGATACATTGACATCAGGTTCAATGACTTTGAAGGGGAATTGCCTCCTAAGCTTTTCAAACAAAGTTTCGACGCTATATTTGTGAACAACAACCGCTTCTCGTCCAATATTCCTGAGAACATAGGATCAACTCCAGCCACGGTTGTGGTTATTGCCAATAACAATTTCTCAGGATGCGTGCCTTCCAGCGTCGGCGAAATGAAGTCGCTAAACGAGTTTGTTTTGGTCAACAACAACCTCACCGGTTGCTTGCCAGAAGAAATTGGAAAACTCGAAAAAGTTACGGTGTTTGACATAAGCTACAACAACTTCGTTGGCGTGTTGCCGAGGAACTTCAATGGGCTTAAGAACGTTGAGTACTTGTCCATTTCACATAACAAGTTTACAGGTTTTGTCCCTCGTAATGTTTGCAGCTTGCCCCATTTGGTGAACTTCACATTCGCCGATAACTATTTCAACGGAGAGGAAGAAGGTTGCGTACCTCAAAAGAAAGAGCCTCTGTTGGAGGATGAGAATAATTGCATACCAGATAGGCCAAAGCAAAAACAGTCAAACGTTTGTAACGAGGTGATAAGCAAGCCTGTGGATTGTAGCAAAAACAAGTGTGGCCATGGGGGCTCTCCATCTTCCGGTTCTCCATCAACGCCGTCTAAGTCACCCTCGCCACCTAAAAGTGAGAAACAGACACCATCACCACAGCCCAAATCTCCACCCACCCCTTCACAACAGCAACAGCCCAGCTCTCCCCCTCCGACACCTAAGCCACAGCCACCACCTACCCCAACTCCACAACAACAACAACCCACTCCCCCCACGCCTCAACAACCCACACCCTCACCACCACCACAGGATGATACCCACAGCGAATCACCCAAGAATCGTGAAAGAACTCCACCACCTGTCCACTCTCCTCCACCACCTGTCTACTCTCCTCCACCACCTGTCCACTCCCCACCACCCCCTGTTCAATCTCCACCCCCACCGGTTCACTCTCCTCCACCACCGGTTCACTCTCCTCCACCACCGGTTCACTCTCCTCCTCCACCGGTTCACTCTCCTCCACCACCGGTTCACTCCCCTCCCCCCCCAGTGCATTCTCCACCACCACCCGTCCAATCTCCTCCCCCACCCGTTCACTCTCCTCCCCCACCCGTCCATTCTCCTCCTCCACCCGTCTTCTCTCCTCCTCCCCCAGTTTACTCTCCACCTCCACCTGTTCACTCTCCTCCTCCCCCAGTTCACTCTCCACCTCCACCTGTTCAATCTCCTCCTCCACCAGTTTACTCTCCTCCGCCGCCTGTTCACTCTCCACCACCTCCAGTGTACTCTCCACCACCTCCAGTGTACTCTCCACCGCCACCAGTGCAGTCTCCACCACCTCCTACACCAACTCCTTCGCCTCCTATGGAAGACGTCGTCCTTCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTACCATTGCCGGCTACTAG 2043 0.5066 MASSFFLLLSLFLFSSLSSFSHALSDVEASFIARRQMMHLEENQDLPDNYVSNYKTNLKFAHTRLKAAYIALEAWKKAIYSDPSNFTSNWSGQDVCSYNGVFCAQALDDKNIQVVAGIDLNHADIAGYLPPEVGLLTDLALLHINSNRFCGIITHSFSNLRILYELDISNNRFVGRFPEHVLEISELRYIDIRFNDFEGELPPKLFKQSFDAIFVNNNRFSSNIPENIGSTPATVVVIANNNFSGCVPSSVGEMKSLNEFVLVNNNLTGCLPEEIGKLEKVTVFDISYNNFVGVLPRNFNGLKNVEYLSISHNKFTGFVPRNVCSLPHLVNFTFADNYFNGEEEGCVPQKKEPLLEDENNCIPDRPKQKQSNVCNEVISKPVDCSKNKCGHGGSPSSGSPSTPSKSPSPPKSEKQTPSPQPKSPPTPSQQQQPSSPPPTPKPQPPPTPTPQQQQPTPPTPQQPTPSPPPQDDTHSESPKNRERTPPPVHSPPPPVYSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVFSPPPPVYSPPPPVHSPPPPVHSPPPPVQSPPPPVYSPPPPVHSPPPPVYSPPPPVYSPPPPVQSPPPPTPTPSPPMEDVVLPPHFGSSYASPPPPTIAGY 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00021 680 FunFam Leucine-rich repeat receptor protein kinase EMS1 230 322 - -
Vium991g00021 680 MobiDBLite consensus disorder prediction 384 680 - -
Vium991g00021 680 MobiDBLite consensus disorder prediction 484 659 - -
Vium991g00021 680 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 6 557 - -
Vium991g00021 680 MobiDBLite consensus disorder prediction 402 472 - -
Vium991g00021 680 SUPERFAMILY L domain-like 74 345 - -
Vium991g00021 680 FunFam Leucine-rich repeat extensin-like protein 1 69 229 - -
Vium991g00021 680 Gene3D Ribonuclease Inhibitor 69 234 IPR032675 -
Vium991g00021 680 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Vium991g00021 680 Pfam Leucine rich repeat 280 333 IPR001611 GO:0005515
Vium991g00021 680 Gene3D Ribonuclease Inhibitor 235 362 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00021 Vium-Chr991 177097 179253 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00021 6 452 Trihelix Transcription Factor Family AT3G19020 52.708 7.04e-172 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00021 - - vum:124824494 634.024