Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00020 ATGGCCTCCAGCTTCTTTCTCTTACTCTCCCTATTCCTCTTCTCATCACTATCATCTTTCTCCCATGCACTTTCCGATGTCGAAGCCTCTTTCATTGCTCGTCGCCAAATGATGCATTTGGAGGAGAATCAGGACTTGCCCGACAACTACGTAAGTAACTACAAAACAAACCTAAAATTCGCTCACACCAGGCTAAAAGCTGCATACATTGCACTCGAGGCGTGGAAAAAAGCTATCTACTCAGACCCCTCAAATTTCACATCAAATTGGTCGGGCCAAGACGTTTGCTCCTACAATGGAGTTTTTTGTGCACAGGCTCTTGATGACAAAAATATCCAAGTTGTGGCTGGGATTGATCTTAACCATGCAGACATCGCAGGTTACCTTCCCCCAGAAGTTGGTCTGTTAACTGACCTTGCACTTTTGCATATAAACTCCAACAGGTTTTGCGGGATCATCCCACACAGCTTTTCCAACCTTCGGATTCTCTATGAGCTAGACATCAGCAACAACCGCTTTGTTGGGCGGTTCCCTGAACACGTGCTTGAAATTTCAGAACTCAGATACATTGACATCAGGTTCAATGACTTTGAAGGGGAATTGCCTCCTAAGCTTTTCAAACAAAGTTTCGACGCTATATTTGTGAACAACAACCGCTTCTCGTCCAATATTCCTGAGAACATAGGATCAACTCCAGCCACGGTTGTGGTTATTGCCAATAACAATTTCTCAGGATGCGTGCCTTCCAGCGTCGGCGAAATGAAGTCGCTAAACGAGTTTGTTTTGGTCAACAACAACCTCACCGGTTGCTTGCCAGAAGAAATTGGAAAACTCGAAAAAGTTACGGTGTTTGACATAAGCTACAACAACTTCGTTGGCGTGTTGCCGAGGAACTTCAATGGGCTTAAGAACGTTGAGTACTTGTCCATTTCACATAACAAGTTTACAGGTTTTGTCCCTCGTAATGTTTGCAGCTTGCCCCATTTGGNATAA 993 0.4431 MASSFFLLLSLFLFSSLSSFSHALSDVEASFIARRQMMHLEENQDLPDNYVSNYKTNLKFAHTRLKAAYIALEAWKKAIYSDPSNFTSNWSGQDVCSYNGVFCAQALDDKNIQVVAGIDLNHADIAGYLPPEVGLLTDLALLHINSNRFCGIIPHSFSNLRILYELDISNNRFVGRFPEHVLEISELRYIDIRFNDFEGELPPKLFKQSFDAIFVNNNRFSSNIPENIGSTPATVVVIANNNFSGCVPSSVGEMKSLNEFVLVNNNLTGCLPEEIGKLEKVTVFDISYNNFVGVLPRNFNGLKNVEYLSISHNKFTGFVPRNVCSLPHLX 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00020 330 FunFam Leucine-rich repeat extensin-like protein 1 69 230 - -
Vium991g00020 330 Gene3D Ribonuclease Inhibitor 69 233 IPR032675 -
Vium991g00020 330 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 6 329 - -
Vium991g00020 330 FunFam Leucine-rich repeat receptor protein kinase EMS1 231 322 - -
Vium991g00020 330 Gene3D Ribonuclease Inhibitor 234 330 IPR032675 -
Vium991g00020 330 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Vium991g00020 330 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Vium991g00020 330 Pfam Leucine rich repeat 280 329 IPR001611 GO:0005515
Vium991g00020 330 SUPERFAMILY L domain-like 74 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00020 Vium-Chr991 175049 176155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00020 6 329 Trihelix Transcription Factor Family AT3G19020 61.728 3.99e-143 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00020 - - vum:124824494 637.106