Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00010 ATGATCACTACACAAAAATACCCGCTTTTCTGGTTCTACTTAGCGGCTGAATTCATATTTTTCATTCCATTAACCAGTACCCAATTGCAGCATCACGAGTGCCGCCAAACATGCGGTTCCTCCGATCCTTTCCCTTACCCTTTCGGATTCTCCTCCGGATGCATAATCCGTTTGAATTGCACCGCCGGAAGAGCCTCCGTCGGAGAATTCCCCCTCGAAAAGGTGAGCACATACAGCATAATCGTCAACATCGAAGCTCAGTGCAGTCGTCCGTTCGATAGTTTTGGCCAACTCTTCAGCCACAAATACGCGCCCACTTTGCGAAACGTGATTCTGTTGGAGAACTGTACCGGAACTCCCTTGCCCTTTCCCTGCTCCATTTCGGGGAATCTGGTTCGGACCCGCTTCGAATCCGTGGGATGCAACGGCACAGTATCGGACAATTTGACTTGCTACTTCGAGAACAAAACAAGCGGTTTCGTGAATCGCCGAGAATTGGAGTCTTCCGGGTGCAAGTACTTCATGTCATCTCTTTCATTCCCAGATGTTACAGACGTCTCCGGTGAGCCTCTGTCTTTGGAAGTAAATACAATCGAACTTGGATGGTGGGTCCAGGGAGATCGATGTCTGTGTTCCGATCACGCCAATTGTACCAAGCTTCAATCCCCGGTGGACGGAAAGCCCGGTTTCCGCTGTGCCTGCCGCGACGGCTTCGTCGGTGACGGGTTTTTGGCCGGAACAGGTTGCCAGAAAGCCTCGTCATGCAACCCAGCGAAGTACTTATCTGGCCGATGTGGAGGAACAACCAGATTCATTGTCTTAATCGGAGGGTTTGTTATCGCCGTTTCACTGATTATCACTGCGGCTTCACTATGCTGTTTCTTCCGCCGGCGCACCAAACTGAGAGTCACAAAGAGCACAAAAAGACGATTAACCGAAGCCACCGGAAACAATGGTGTTCCTATCTATCCCTACAAAGACATTGAGAGAGCCACGAATAGTTTCTCAGAGAACCAACGGTTGGGAACTGGGGCGTACGGCACAGTTTATGCAGGGAAATTGTACAGCGATGAATGGGTTGCCATCAAAAGAATAAAACACAGAGACACTGACAGTATTGAACAGGTAATGAACGAGATCAAGCTCCTGTCCTCTGTGAGCCACACCAATTTAGTTCGCTTGTTGGGTTGCTCCATTGAATACGGAGAACAAATCCTGGTGTACGAGTTCATGCCCAATGGAACACTAAGTCAGCACTTGCAGAAGGAGAGAGGACAAGGTCTTCCTTGGTCCGTTCGACTCACCATTGCCACTGAAACGGCACAAGCCATCGCGCATCTTCATTCAGCCATTAATCCCCCCATTTACCACCGAGACATCAAATCCAGCAATATACTTTTAGACCACAATTTCAGGTCAAAAGTGGCAGACTTTGGTCTTTCTAGACTTGGAATGACTGAAATATCTCACATTTCAACTGCCCCACAGGGAACTCCTGGCTATGTGGATCCACAATATCATCAAGATTTTCACCTCTCTGACAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTAGTTGAGATCATAACGGGACTAAAAGTGGTAGACTTTTCACGTTTTCCTAATGAAGTGAACTTGGCTTCTCTTGCTGCAGATAGGATTGGAAAAGGGCTTTTGGATGAGATTATAGACCCATTCCTTGAACCCGAAACAAGAAGTGACGCTCGGACCCTTTCCTCCATACACAAGGTGGCTGAGTTGGCATTTAGATGCCTAGCGTTCCACAGGGACATGAGGCCTTCGATGACGGAAGTGGCTTGTGAGTTGGAGCAACTTAGGTTGAGTCAATGGACAACATTGGGAGACAACAATTGTGCAACCTCAACGGAGTTGTCCTCTTGCTCTTCCTCATCCAATGAAAGTGAGAAACCACTGAGTACCACAACGAAGAACGTTGGAGAAAAGGGTAAAGGGTACCTTAATATTCAAACTAGGCCTATTACTTTGAAATCATTACAAAGGCCTAATATTAATTCACCAGTCTCGGTGCAAGACCAAGAGTTATGGTTGAGTGAACAGAGTTCTCCTTCATCAAATAGTTTTCCAAGCAAGTCATTTGATTGA 2124 0.4708 MITTQKYPLFWFYLAAEFIFFIPLTSTQLQHHECRQTCGSSDPFPYPFGFSSGCIIRLNCTAGRASVGEFPLEKVSTYSIIVNIEAQCSRPFDSFGQLFSHKYAPTLRNVILLENCTGTPLPFPCSISGNLVRTRFESVGCNGTVSDNLTCYFENKTSGFVNRRELESSGCKYFMSSLSFPDVTDVSGEPLSLEVNTIELGWWVQGDRCLCSDHANCTKLQSPVDGKPGFRCACRDGFVGDGFLAGTGCQKASSCNPAKYLSGRCGGTTRFIVLIGGFVIAVSLIITAASLCCFFRRRTKLRVTKSTKRRLTEATGNNGVPIYPYKDIERATNSFSENQRLGTGAYGTVYAGKLYSDEWVAIKRIKHRDTDSIEQVMNEIKLLSSVSHTNLVRLLGCSIEYGEQILVYEFMPNGTLSQHLQKERGQGLPWSVRLTIATETAQAIAHLHSAINPPIYHRDIKSSNILLDHNFRSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFSRFPNEVNLASLAADRIGKGLLDEIIDPFLEPETRSDARTLSSIHKVAELAFRCLAFHRDMRPSMTEVACELEQLRLSQWTTLGDNNCATSTELSSCSSSSNESEKPLSTTTKNVGEKGKGYLNIQTRPITLKSLQRPNINSPVSVQDQELWLSEQSSPSSNSFPSKSFD 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00010 707 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Vium991g00010 707 FunFam Wall-associated receptor kinase-like 14 isoform A 209 244 - -
Vium991g00010 707 Pfam Protein kinase domain 336 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00010 707 MobiDBLite consensus disorder prediction 682 707 - -
Vium991g00010 707 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 653 IPR044652 GO:0004672
Vium991g00010 707 SUPERFAMILY Protein kinase-like (PK-like) 314 610 IPR011009 -
Vium991g00010 707 MobiDBLite consensus disorder prediction 629 654 - -
Vium991g00010 707 ProSiteProfiles Protein kinase domain profile. 335 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00010 707 Gene3D Phosphorylase Kinase; domain 1 296 410 - -
Vium991g00010 707 Gene3D Transferase(Phosphotransferase) domain 1 411 630 - -
Vium991g00010 707 Gene3D Laminin 210 244 - -
Vium991g00010 707 FunFam Wall-associated receptor kinase-like 20 411 621 - -
Vium991g00010 707 SMART serkin_6 335 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium991g00010 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vium991g00010 707 MobiDBLite consensus disorder prediction 629 657 - -
Vium991g00010 707 FunFam Wall-associated receptor kinase-like 14 302 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00010 Vium-Chr991 70839 76000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00010 34 701 Receptor kinase-like Gene Family AT2G23450 51.694 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium991g00010 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00010 - - gmx:100777480 1128.62