Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium991g00002 ATGGCAAGTGGGTTTGGGGAATCAACTGGGAGGTCACCCCCAAGCCCTTCTTACTTCAACAATAATAATAGCAATGATGCTGGCAATTTTGAGTGCAACATTTGCTTTGAATTAGCGCAAGACCCCATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCGGTTTGCAAGGCCCTTGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGACCTCCACTGATCCGAGATCCAAGTCTATTCCGGGCATGAATATCCCACATCGTCCGGCCGGTCAGAGACCTGAAACTGCTCCTCTACCGGAAACAAATAATTTTCCTCCTCCTGGGTTTGGATTTATGGGTGGCCTGGGAGGATTTGCGCCACCGCCAATGGCATCAACGAGATTTGGGAATTTCGGATTGCCTGCAGCTTTTGGTGGCTTTATACCGTCCTTTTTCAACTTTCAGTTGCATGGGTTTCACGATGGGGCCTTGTATGGGGGAGCGTCTGGTTTTCCTCATGGGTTTTCTAATACATTTCATGGTGTCCATGCTCATGGATATCCTCTTCGCACTCATCAAGGTCAACAAGATTATTATTTGAAGAAGCTGCTTCTAGTTGTTGTTTTCTGTGTTCTTCTTGCTTTTATTTGGCAATAG 696 0.4641 MASGFGESTGRSPPSPSYFNNNNSNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGMNIPHRPAGQRPETAPLPETNNFPPPGFGFMGGLGGFAPPPMASTRFGNFGLPAAFGGFIPSFFNFQLHGFHDGALYGGASGFPHGFSNTFHGVHAHGYPLRTHQGQQDYYLKKLLLVVVFCVLLAFIWQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium991g00002 231 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Vium991g00002 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vium991g00002 231 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Vium991g00002 231 MobiDBLite consensus disorder prediction 1 20 - -
Vium991g00002 231 SMART ring_2 32 72 IPR001841 -
Vium991g00002 231 CDD RING-HC_AtRMA-like 30 74 - -
Vium991g00002 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Vium991g00002 231 SUPERFAMILY RING/U-box 29 85 - -
Vium991g00002 231 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Vium991g00002 231 MobiDBLite consensus disorder prediction 86 116 - -
Vium991g00002 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium991g00002 Vium-Chr991 3294 4792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium991g00002 30 214 C3H Transcription Factor Family AT1G19310 64.249 4.30e-83 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium991g00002 K10666 - gmx:100794086 402.134