Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9910g00002 ATGGAATTTGAGGATCAGGAGGACCAAGAGGAGGAGCAGTGTATGGGTGCCGCAGCTTACGACCCCGCCCGGATGAAGGTTCCGCTCGGTCCGGAGGCAGTCATGGCTGCGCAGCCTGTGAGAAGCAGCACCAACGGCGGCGCAGGGAGGGCACGCTACAGAGAGTGTCTGAAGAACCACGCCGTCGGCATCGGCGGCCACGCGCTCGACGGCTGCGGTGAGTTCATGGCAGCGGGGACGGAGGGTTCCATCGACGCGCTTAAATGTGCAGCCTGCAGCTGCCACCGCAACTTTCACCGCAAGGAGAGCGATGGGGCCGGCGCCTCCGTCGGCGGTGGGGACCCCTACTTGGTTTCGCACCACCCGTTGCACCACCCTCCGCCGCCCCAGTTCGCGGCGTACTACCGGACCCCGACTGGATACCTTCAGGTGGGGGGGCAGGCGCGCGTGGCTGGGACGCTGGCGCTGCCGTCGACGTCCGGCGGCGGTGGGACGCAGAGCACTCGGGAGGACCAGGAGGACGTTTCGAACCCGAGTGCAGGTGGAACGGGGTCCAAGAAACGGTTCAGAACAAAGTTCACGCAGGAGCAAAAGGACAAAATGCTTGAACTTGCTGAAAAACTAGGGTGGAGGATTCAGAAACACGACGAGGGTGTGGTCCAAGCCTTCTGCAACGAAACCGGGGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 750 0.624 MEFEDQEDQEEEQCMGAAAYDPARMKVPLGPEAVMAAQPVRSSTNGGAGRARYRECLKNHAVGIGGHALDGCGEFMAAGTEGSIDALKCAACSCHRNFHRKESDGAGASVGGGDPYLVSHHPLHHPPPPQFAAYYRTPTGYLQVGGQARVAGTLALPSTSGGGGTQSTREDQEDVSNPSAGGTGSKKRFRTKFTQEQKDKMLELAEKLGWRIQKHDEGVVQAFCNETGVKRHVLKVWMHNNKHTLGKKP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9910g00002 249 FunFam Zinc-finger homeodomain protein 2 172 247 - -
Vium9910g00002 249 MobiDBLite consensus disorder prediction 103 124 - -
Vium9910g00002 249 MobiDBLite consensus disorder prediction 158 184 - -
Vium9910g00002 249 MobiDBLite consensus disorder prediction 154 191 - -
Vium9910g00002 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Vium9910g00002 249 Pfam ZF-HD protein dimerisation region 51 103 IPR006456 -
Vium9910g00002 249 NCBIfam homeobox domain, ZF-HD class 186 242 IPR006455 -
Vium9910g00002 249 Gene3D - 170 247 - -
Vium9910g00002 249 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Vium9910g00002 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 245 - -
Vium9910g00002 249 SUPERFAMILY Homeodomain-like 174 247 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9910g00002 Vium-Chr9910 21948 23238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9910g00002 49 245 ZF-HD Transcription Factor Family AT4G24660 53.299 6.22e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium9910g00002 ZF-HD_dimer 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9910g00002 - - gmx:100808910 381.719