Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium990g00006 ATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACAGGAAACGAGGAGACCGCAGCCGGAGCTTCCGACCAGACCCACCGTCAAATCTTCGACCACTACGCCTCGCACTCGCTCATCCCCGACCACTTTCTGCACGCGCCAACTCACTCCGCCGTCACCACTGCCGCGGCACCCACCGTCGACTTCACCAACCACCACCACCACTTCAACCCGCAGCCGCACCACCACCACGTCAACAGCCACCACCACCACCCGTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTCCGCCTCCTACCCCCCACCCCCTTCCATGCTCTCCCTTGACCCGCTTCCCCACGTCAACGCCACCAACTGCGGCCCCGGGCCCGGACCCGGCCCGGGCGGACTCCTCCTCGTTCCCAAGTCCGAGGACGTCGGTCGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTAAATCTCGGTGGGCGGACGTATTTCTCCTCCTCCGAGGACGATTTCGTGAGCCGTCTGTACCGTCGGTCTCGGCCGGCGGAATCCGGTTCGGCGGCTTCCTCCAACTCCCCGCGCTGCCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGACGCCACAAGGTGTGCGAGTTCCACTCCAAAGCCGCCACCGTCATCGCAGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTGTGGTGGCGCCTGTCTCTTCCCCACCGTCGGAAAATAAACATCAATCATTGA 777 0.6281 MLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSAVTTAAAPTVDFTNHHHHFNPQPHHHHVNSHHHHPFFDPRAFHGASSASYPPPPSMLSLDPLPHVNATNCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLWWRLSLPHRRKININH 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium990g00006 258 Gene3D - 185 247 IPR036893 GO:0003677|GO:0005634
Vium990g00006 258 Pfam SBP domain 195 242 IPR004333 GO:0003677
Vium990g00006 258 ProSiteProfiles Zinc finger SBP-type profile. 192 258 IPR004333 GO:0003677
Vium990g00006 258 SUPERFAMILY SBT domain 193 244 IPR036893 GO:0003677|GO:0005634
Vium990g00006 258 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 116 241 IPR044817 GO:0003677
Vium990g00006 258 MobiDBLite consensus disorder prediction 98 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium990g00006 Vium-Chr990 95594 96997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium990g00006 1 242 SBP-box Gene Family AT1G02065 43.446 1.22e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium990g00006 SBP 3.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium990g00006 - - vun:114181599 450.669