Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium990g00005 ATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACAGGAAACGAGGAGACCGCAGCCGGAGCTTCCGACCAGACCCACCGTCAAATCTTCGACCACTACGCCTCGCACTCGCTCATCCCCGACCACTTTCTGCACGCGCCAACTCACTCCGCCGTCACCACTGCCGCGGCACCCACCGTCGACTTCACCAACCACCACCACCACTTCAACCCGCAGCCGCACCACCACCACGTCAACATCCACCACCACCACCCGTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTCCGCCTCCTACCCCCCACCCCCTTCCATGCTCTCCCTTGACCCGCTTCCCCACGTCAACGCCACCAACTGCGGCCCCGGGCCCGGACCCGGCCCGGGCGGACTCCTCCTCGTTCCCAAGTCCGAGGACGTCGGTCGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTAAATCTCGGTGGGCGGACGTATTTCTCCTCCTCCGAGGACGATTTCGTGAGCCGTCTGTACCGTCGGTCTCGGCCGGCGGAATCCGGTTCGGCGGCTTCCTCCAACTCCCCGCGCTGCCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGACGCCACAAGGTGTGCGAGTTCCACTCCAAAGCCGCCACCGTCATCGCAGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTCTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCACAATCGCCGCAGAAGAAAAACTCAGCAACCATCTCAAGAAATTCAGAAATCTCAACCCTCTTTGGATAATGTTGCAAGATCTCCACCTGACTCCGGAGCCCAGTCGTCGTCGGTGACGGTGGCGGTGTCCCCGCCGGACTATTTCCGGCAGAGGCCGTATCAGAGCACAAACCCTTCTACAAATTCAAGCTCACTGTTTTTCTCCAGCGGGTAG 999 0.5996 MLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSAVTTAAAPTVDFTNHHHHFNPQPHHHHVNIHHHHPFFDPRAFHGASSASYPPPPSMLSLDPLPHVNATNCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPSQEIQKSQPSLDNVARSPPDSGAQSSSVTVAVSPPDYFRQRPYQSTNPSTNSSSLFFSSG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium990g00005 332 MobiDBLite consensus disorder prediction 261 332 - -
Vium990g00005 332 Pfam SBP domain 195 268 IPR004333 GO:0003677
Vium990g00005 332 MobiDBLite consensus disorder prediction 273 332 - -
Vium990g00005 332 Gene3D - 185 256 IPR036893 GO:0003677|GO:0005634
Vium990g00005 332 ProSiteProfiles Zinc finger SBP-type profile. 192 269 IPR004333 GO:0003677
Vium990g00005 332 SUPERFAMILY SBT domain 193 272 IPR036893 GO:0003677|GO:0005634
Vium990g00005 332 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 116 323 IPR044817 GO:0003677
Vium990g00005 332 FunFam Squamosa promoter-binding-like protein 14 186 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium990g00005 Vium-Chr990 89513 92317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium990g00005 1 242 SBP-box Gene Family AT1G02065 43.446 8.36e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium990g00005 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium990g00005 - - gmx:100802206 536.954