Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium990g00003 ATGAACTTTGGAGACACCACCAACACCTTCACCCTCACCACCACCCCCACAAAACAGGAAACCAGTAACAACATTCTTTCCTACTCATCATGCCTACAACCTACTAATCTTCTTCCTACTCCTAATTCTATCCACATCACCACGCCGCCACCGGACAGTTACGCCGCCGCTCACCGCCGCCAACTATACGCCAGAGAAGGGTCTCACGTGCACTGGGACCCTCACCTCACGTGCTTGCATCTTGGTAAGAGACATTACTTTGAGGATGTTACCATCGATGATGTTAGTAAATATAATAATAATGGTAATAGTGTTGCCACTCTGGGGAAACCACACGTGTGCCGCGTTGGTGGTGGTGTTGTTATTTCGGGGAGCCGACACGTGGGCGCTGACGATGGTGATATCACACTGGGGAATCGACACGTGTACGGCGGTGATGGTGGTGCTGGTTACTTTTTACAGGGCAACGATAAGAGAGCGCGGGGGTGTCATGGAGGAGCTGCCGGTGGGGGTGGCGGTGGCGGGAGCGTGAAAACGGCGGCGTTAGGGATGGTTCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGTTGGTGAATGCGAAAGAGTACCATAGGAGACATAGAGTTTGTGATATGCATTCGAAGGCACCCAAAGTTGTGGTGTTGGGTTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATCTGGTATCAGAGTTTGACGACTCAAAGAGAAGTTGCAGGAGAAGATTAGCAGGCCATAACGAAAGAAGAAGAAAAAGCTCTCACCTTTCTGTTACCAGAAGTTCTAGACAAGGGTGTGCTCTCTCTCTTCTGTCATTTGAGAGCAGTGATAATTGGTGGTCTCATTCTGATCTCTCCACAAGATGCAGTGCAGCATTGCGTGAACTCATAGCAGAAAACCGTGCTGCCCTAATCACAAGACAACAACAGCAACATGTTTATGTTGTGCCCCACCATGATGATGATGCACTGGATGAACTAGAGTTTGTGGAGATACAACCTCAGTCCAATTATTTTCCTCATCACATGTTTTCCCAGACACAAGAATAA 1077 0.494 MNFGDTTNTFTLTTTPTKQETSNNILSYSSCLQPTNLLPTPNSIHITTPPPDSYAAAHRRQLYAREGSHVHWDPHLTCLHLGKRHYFEDVTIDDVSKYNNNGNSVATLGKPHVCRVGGGVVISGSRHVGADDGDITLGNRHVYGGDGGAGYFLQGNDKRARGCHGGAAGGGGGGGSVKTAALGMVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKVVVLGLEQRFCQQCSRFHLVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRSSRQGCALSLLSFESSDNWWSHSDLSTRCSAALRELIAENRAALITRQQQQHVYVVPHHDDDALDELEFVEIQPQSNYFPHHMFSQTQE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium990g00003 358 Gene3D - 182 249 IPR036893 GO:0003677|GO:0005634
Vium990g00003 358 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 137 283 IPR044817 GO:0003677
Vium990g00003 358 FunFam Squamosa promoter-binding-like protein 14 179 249 - -
Vium990g00003 358 ProSiteProfiles Zinc finger SBP-type profile. 185 262 IPR004333 GO:0003677
Vium990g00003 358 Pfam SBP domain 188 261 IPR004333 GO:0003677
Vium990g00003 358 SUPERFAMILY SBT domain 186 264 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium990g00003 Vium-Chr990 47710 52596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium990g00003 185 268 SBP-box Gene Family AT2G42200 70.238 1.32e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium990g00003 SBP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium990g00003 - - pvu:PHAVU_010G056200g 511.916