Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9909g00002 ATGTGGGATCTCAATTACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCATCTACGGGGACGATGACAACATCAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCCAGCTCTTCGGCTGTGGTAATCGAGGACGGATCAGAAGAAGAGGAGGACGACGACGAGGAGGACGAAGAAGGTGGCAGAAGAAGCATGAAGAAGCGAAGCAGCAAGATTTTCGGGTTCTCTGTGACCGAAGATTGTGAGTCCATGGACAGTGACCACCCACCTGTGACAAGACAGTTTTTTCCGGTGGAGGAGGCTGACGTGGCGGTTGCATCGGGTGGTGGAAGCTCCACCTTCCCTAGAGCTCACTGGGTAGGTGTAAAATTTTGCCAATCAGAAGCACTTGGTGCTGGAAAATCAGTCGAAGTCTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGAAGCTCTCAGTATAGAGGAGTCACCTTTTACAGAAGAACGGGTCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGGGCCTATGATCGTGCGGCCATCAAGTTCCGAGGAGTGGAGGCCGACATAAACTTCAATATTGAAGATTATGAAGACGACCTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGTCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACCGAGATTGAAGCTGCAAAGGCTTATGACAAAGCAGCCATAAAATGCAATGGCAAAGAGGCCGTAACCAATTTTGATCCCAGCATCTATGAGAACGAGCTTAACTCCGGAGCAGAATCCACAGGGAACGGTGCAGATCACAATCTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGGGTGGCGGTAACCAAGCGTTTGGGAATCATCATCACGGCAGCAATGGTGGAAATCATGATCAACAGGTGGCAGCTGAATCTAATTGGCGAAATGGGGGAAGCAAACCTAAGCTGGTGAATATACTGCCAAAACCATGTAATAGAGGGAACAAGGACACACAGGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGAGGATGCTAAGTCAAACCCACCTTCATTGCCCAGCTTCCAGTGAAATGCAAAGATATGGTCCCTACAGGTCTACCGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCTCCCATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTGTCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGA 1566 0.4834 MWDLNYSPDQRKDEESEGCSSLKTSIYGDDDNIKGKRVGSVSNSSSSAVVIEDGSEEEEDDDEEDEEGGRRSMKKRSSKIFGFSVTEDCESMDSDHPPVTRQFFPVEEADVAVASGGGSSTFPRAHWVGVKFCQSEALGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKCNGKEAVTNFDPSIYENELNSGAESTGNGADHNLDLSLGNSSSKGGGNQAFGNHHHGSNGGNHDQQVAAESNWRNGGSKPKLVNILPKPCNRGNKDTQGRDVHGESEALRMLSQTHLHCPASSEMQRYGPYRSTGGESQMLQNFAPIHPPNFHFPSSSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSGFPQQIRPSSQGWLQKNGFHTLMRPS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9909g00002 521 MobiDBLite consensus disorder prediction 320 374 - -
Vium9909g00002 521 CDD AP2 254 314 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Vium9909g00002 521 MobiDBLite consensus disorder prediction 37 51 - -
Vium9909g00002 521 FunFam AP2-like ethylene-responsive transcription factor 162 221 - -
Vium9909g00002 521 SUPERFAMILY DNA-binding domain 254 314 IPR016177 GO:0003677
Vium9909g00002 521 MobiDBLite consensus disorder prediction 1 19 - -
Vium9909g00002 521 CDD AP2 163 220 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 ProSiteProfiles AP2/ERF domain profile. 163 219 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 ProSiteProfiles AP2/ERF domain profile. 255 312 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 93 408 - -
Vium9909g00002 521 SMART rav1_2 255 318 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 SMART rav1_2 163 225 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 Gene3D AP2/ERF domain 254 313 IPR036955 GO:0003700|GO:0006355
Vium9909g00002 521 Gene3D AP2/ERF domain 162 221 IPR036955 GO:0003700|GO:0006355
Vium9909g00002 521 MobiDBLite consensus disorder prediction 320 402 - -
Vium9909g00002 521 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 Pfam AP2 domain 254 303 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 MobiDBLite consensus disorder prediction 1 77 - -
Vium9909g00002 521 MobiDBLite consensus disorder prediction 52 66 - -
Vium9909g00002 521 PRINTS Ethylene responsive element binding protein signature 256 267 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 PRINTS Ethylene responsive element binding protein signature 294 314 IPR001471 GO:0003700|GO:0006355
Vium9909g00002 521 FunFam AP2-like ethylene-responsive transcription factor 254 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9909g00002 Vium-Chr9909 15332 18669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9909g00002 1 344 AP2-EREBP Transcription Factor Family AT4G36920 68.524 1.86e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium9909g00002 AP2 5.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9909g00002 K09284 - gmx:100792442 827.009