Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9893g00003 ATGCATAGTCACGTGGCCATGTCTTCTTCCTCTCATAGGTTGTCTCCCAGCCAACGCCTTGCAGTAAGTGCAAAGGAATATCTTCTCATTAAAGAAGAGGTGAGGAAGGTGTTGTCTAAGGGAAAGGCAGCTGGGGTGCTTCGATTGGTTTTCCACGATGCTGGAACCTTTGACATCAATGACAATTCAGGTGGTATGAATGGTTCTATAGTCTATGAACTTGAAAGACCCGAAAATGCCGGCCTGAAAAAATCAGTAAAGGTACTGCAAAAAGCAAAGACTCAGATAGATGCCATCCAACCAGTATCTTGGGCGGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTGAAGTATGTGGAGGTCCACCTATCCAAGTTTCACTGGGCAGACTAGATGCACTGGTGCCTGATCCAGAAGGGAGACTCCCCGAGGAATCTCTTAATGCTTCTGGTTTGAAGAAATGTTTCCAGAGCAAAGGCTTATCAACACAAGAACTCGTGGCATTATCCGGAGCCCATACTATTGGAAGCAAAGGTTTTGGAAGCCCAAATTCTTTTGATAATTCATATTATAAGGTCCTTTTGGAAAAGCCATGGACGTCTTCAGGTGGTATGTCGAGTATGATTGGCCTTCCTTCAGATCACGCCCTTGTTGAGGATGATGAATGCTTAAGATGGATTAAAAAATACGCCGACAGTGAGAATCTGTTCTTTGAAGATTTCAAAAATGCGTATGTCAAGCTGGTTGATTCTGGTGTGAGGTGGAAAAACATGTAA 777 0.4414 MHSHVAMSSSSHRLSPSQRLAVSAKEYLLIKEEVRKVLSKGKAAGVLRLVFHDAGTFDINDNSGGMNGSIVYELERPENAGLKKSVKVLQKAKTQIDAIQPVSWADMIAVAGAEAVEVCGGPPIQVSLGRLDALVPDPEGRLPEESLNASGLKKCFQSKGLSTQELVALSGAHTIGSKGFGSPNSFDNSYYKVLLEKPWTSSGGMSSMIGLPSDHALVEDDECLRWIKKYADSENLFFEDFKNAYVKLVDSGVRWKNM 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9893g00003 258 FunFam Adenylate/guanylate cyclase 143 245 - -
Vium9893g00003 258 ProSiteProfiles Plant heme peroxidase family profile. 43 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 ProSitePatterns Peroxidases active site signature. 43 54 IPR019794 GO:0004601
Vium9893g00003 258 ProSitePatterns Peroxidases proximal heme-ligand signature. 165 175 IPR019793 -
Vium9893g00003 258 PRINTS Haem peroxidase superfamily signature 120 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Haem peroxidase superfamily signature 165 180 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Haem peroxidase superfamily signature 102 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Haem peroxidase superfamily signature 43 57 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 Gene3D Peroxidase, domain 2 143 245 - -
Vium9893g00003 258 SUPERFAMILY Heme-dependent peroxidases 40 257 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 26 256 IPR044831 GO:0004601|GO:0034599
Vium9893g00003 258 PRINTS Plant ascorbate peroxidase signature 43 58 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Plant ascorbate peroxidase signature 120 132 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Plant ascorbate peroxidase signature 141 158 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Plant ascorbate peroxidase signature 229 253 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Plant ascorbate peroxidase signature 159 180 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Plant ascorbate peroxidase signature 101 119 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 PRINTS Plant ascorbate peroxidase signature 61 71 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 Pfam Peroxidase 32 233 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium9893g00003 258 Gene3D - 31 252 - -
Vium9893g00003 258 FunFam L-ascorbate peroxidase 33 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9893g00003 Vium-Chr9893 11482 15419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9893g00003 43 248 Peroxidase AT4G16270 31.439 8.72e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9893g00003 K00434 - gmx:100792735 441.81