Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9893g00001 ATGGGAAAAGATTGGTCTTTATTGCATATTGTGGGCACCCTTTTCCTTTTGTGCAAAGTTTGTTTAGCTGCGAATCAATATACCGGAAGGATCTCAGCCGGGGGGATAAAGGGTTCTCAAATGAATTGGATTGACAGAAATGGCCAATTCCTCGTATCAAACGATGGAGAATTTTCCTTTGGCTTTGTCACCACAGCGAATGACACCACCTTGTTTCTACTCTCAATCATCCACGTGAGAGCTTCCCGGGTCGTTTGGAGTGCTAATAGAGCAGTTCCTGTTGCTAATTCCGACAACTTTGTGTTTGATGACAAGGGCAACGCCTTCTTGCAGAAAGATGGAACCGTGGTCTGGTCCACGAACACAGGCGGCAAAGGGGTTTCTTCAATGGAATTGCGTGACACTGGGAATTTGGTCTTGCTTGGGAGTGATAATAGTACAGTGATTTGGCAAAGTTTCGGCCATCCAACAGATACTTTGCTTCCAACTCAGGAATTCACAGAGGGAATGAAACTCGTCAGTAATCCTAGCACGAACCACTTGACCCATATTCTTGAGATCAAGTCTGGTATTGTTGTTCTCTCCGCAAGTTTTCAAACTCCGCAGCCTTATTGGACTATGCAGACGGACAGCCGCAGAACCATCAACCAGGGCGGCGATGAAGTTGCTTCAGCAAGCATTAGTGGAAACTCGTGGAAGTTCTATGACAAGAGAAAATCGCTGTTGTCGCAGTTCATTTTCTCTTCAGGTCAAGACTCAAATTCGACTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATCACCTTCTCCACCCTCGGCAGTGGAGGGTCAAATGCTGCTTCTGAAACAATTCCCGAAGATTCTTGCGGTACTCCAGAACCTTGTGATGCATATTCCATATGCACGGGTAACAAGAGGTGTAGCTGCCCTTCTATTATTCCCAGTTGCAAACCTGGTTTTGACTCTCCTTGTGGTGGTGACTCAGGAAAATCCATTCAGTTGGTTAAAGCTGATGATGGACTTCATTACTTTGCTCTTCAATTCCTTCAACCGTTTTCCAAAACCGATCTGGCTGGTTGCCAAACATCTTGCCGTGGAAACTGTTCTTGCCTTGCTATGTTCTTCCAGAGAAGTTCGGGGAATTGTTTCTTGTTGGACAGTGTAGGAAGCTTTCAGAAATCTGATTCTGATCCTGGTTATGTTTCTTATATCAAGGTCTCGAATGAAGGAGGTTCTGGCTCGGGTTCTGGGGGCGGTGGAAGTGGCAATAAGCACACCGTAGTTGTTGTGATAATTGTCTTAGTAAGCTTTTTTGTCATTTGTGGTCTTGTCTTTTGGGGAGTTAGATACCAAAGAAGAAAGCAAAGGGTGCCCGAGTCTCCTTCAGATGGCTCAGAAGAGGCAAATTTCTTGGAAAATTTAACCGGTATGCCAATCCGTTACAGCTACAAGGACCTTGAAACTGCCACCAATAACTTTTCTGTGAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTATAAGGGAGTTCTAGCAGATGGAACTCAAATAGCAGTGAAGAAATTGGAAAGTATTGGACAAGGAAAGAAAGAGTTCAGGGCCGAAGTTAGCATCATTGGCAGCATTCATCACCTCCATTTGGTTAGGCTAAAGGGTTTCTGTGCTGATGGATCTCATAGGATGCTTGCTTACGAGTACATGCCTAATGGCTCCTTGGATAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCAGTTGGATTGGGATACTAGGTTCAATATAGCTCTGGGAACAGCAAAAGGACTTGCTTATCTGCACGAAGATTGTGACTCGAAGATTGTTCATTGTGACATCAAACCAGAAAACGTTCTTCTGGACGAACACTTCATGGCGAAGGTTTCGGATTTTGGGCTGGCGAAGCTGATGAATCGAGAACAAAGCCATGTTTTCACAACACTGAGGGGCACGAGGGGCTATCTTGCGCCGGAGTGGATAACAAACTACGCTATATCAGAGAAAAGTGATGTTTACAGCTACGGGATGGTGCTGTTGGAGATAATCGGAGGAAGGAAAAACTATGATCCTAATGAGTCTTCAGAGAAATCCCATTTCCCAACTTTTGCCTTTAAAATGATGGAAGAAGGGAAGGTGAGGGATATATTTGACTCGGTGTTGAGAATCGACGAGAACGATGAGAGGTTTCAATGTGCTATAAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCAATGAGGCCATCTATGAGTAGAGTTGTTCAAATGTTGGAGGGTCTTTGCACTGTTCCTAACCCACCAACCACTTCTTTCTTGGGTTCTCGCCTTTATTCCGCTGTCTTCAAATCCTCCAGTGAAGGAGGAGCCACCACCTCTTCTGCTCCCTCAGACTGTAACAGTGATGCTTACCTCTCTGCTGTTCGTCTTTCAGGGCCTAGATAA 2454 0.4495 MGKDWSLLHIVGTLFLLCKVCLAANQYTGRISAGGIKGSQMNWIDRNGQFLVSNDGEFSFGFVTTANDTTLFLLSIIHVRASRVVWSANRAVPVANSDNFVFDDKGNAFLQKDGTVVWSTNTGGKGVSSMELRDTGNLVLLGSDNSTVIWQSFGHPTDTLLPTQEFTEGMKLVSNPSTNHLTHILEIKSGIVVLSASFQTPQPYWTMQTDSRRTINQGGDEVASASISGNSWKFYDKRKSLLSQFIFSSGQDSNSTWIAVLGSDGFITFSTLGSGGSNAASETIPEDSCGTPEPCDAYSICTGNKRCSCPSIIPSCKPGFDSPCGGDSGKSIQLVKADDGLHYFALQFLQPFSKTDLAGCQTSCRGNCSCLAMFFQRSSGNCFLLDSVGSFQKSDSDPGYVSYIKVSNEGGSGSGSGGGGSGNKHTVVVVIIVLVSFFVICGLVFWGVRYQRRKQRVPESPSDGSEEANFLENLTGMPIRYSYKDLETATNNFSVKLGQGGFGSVYKGVLADGTQIAVKKLESIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCADGSHRMLAYEYMPNGSLDKWIFKKNKGEFQLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDEHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPNESSEKSHFPTFAFKMMEEGKVRDIFDSVLRIDENDERFQCAIKVALWCIQEDMSMRPSMSRVVQMLEGLCTVPNPPTTSFLGSRLYSAVFKSSSEGGATTSSAPSDCNSDAYLSAVRLSGPR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9893g00001 817 ProSiteProfiles Bulb-type lectin domain profile. 36 153 IPR001480 -
Vium9893g00001 817 ProSiteProfiles Protein kinase domain profile. 491 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9893g00001 817 CDD B_lectin 44 156 IPR001480 -
Vium9893g00001 817 CDD STKc_IRAK 497 764 - -
Vium9893g00001 817 SMART blect_4 42 156 IPR001480 -
Vium9893g00001 817 Gene3D Phosphorylase Kinase; domain 1 459 565 - -
Vium9893g00001 817 FunFam S-receptor-like kinase 5 566 770 - -
Vium9893g00001 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Vium9893g00001 817 FunFam Serine/threonine-protein kinase 38 154 - -
Vium9893g00001 817 FunFam serine/threonine-protein kinase PBS1-like 460 565 - -
Vium9893g00001 817 Pfam Protein kinase domain 495 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9893g00001 817 SUPERFAMILY Protein kinase-like (PK-like) 472 762 IPR011009 -
Vium9893g00001 817 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Vium9893g00001 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 772 - -
Vium9893g00001 817 Pfam D-mannose binding lectin 84 167 IPR001480 -
Vium9893g00001 817 Gene3D - 42 155 IPR036426 -
Vium9893g00001 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 209 IPR036426 -
Vium9893g00001 817 PIRSF SRK 4 812 IPR024171 GO:0004674
Vium9893g00001 817 CDD PAN_AP_plant 352 407 - -
Vium9893g00001 817 SMART serkin_6 491 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9893g00001 817 Gene3D Transferase(Phosphotransferase) domain 1 566 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9893g00001 Vium-Chr9893 7229 10494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9893g00001 439 771 Receptor kinase-like Gene Family AT5G20050 46.875 2.11e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium9893g00001 Pkinase 1.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9893g00001 - - gmx:100791158 1404.81